Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IT777_RS16155 Genome accession   NZ_CP068444
Coordinates   3285488..3286084 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain SWMUF35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3280488..3291084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT777_RS16140 (IT777_16140) helD 3280699..3282753 (-) 2055 WP_135732883.1 DNA helicase IV -
  IT777_RS16145 (IT777_16145) - 3282878..3283324 (+) 447 WP_004201437.1 YccF domain-containing protein -
  IT777_RS16150 (IT777_16150) yccS 3283342..3285477 (+) 2136 WP_135732882.1 YccS family putative transporter -
  IT777_RS16155 (IT777_16155) sxy/tfoX 3285488..3286084 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  IT777_RS16160 (IT777_16160) - 3286102..3286407 (-) 306 WP_156835198.1 hypothetical protein -
  IT777_RS16165 (IT777_16165) sulA 3286433..3286942 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  IT777_RS16170 (IT777_16170) ompA 3287295..3288365 (+) 1071 WP_023289051.1 porin OmpA -
  IT777_RS16175 (IT777_16175) matP 3288512..3288964 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IT777_RS16180 (IT777_16180) - 3289150..3290907 (+) 1758 WP_064155426.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=529126 IT777_RS16155 WP_023289053.1 3285488..3286084(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain SWMUF35]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=529126 IT777_RS16155 WP_023289053.1 3285488..3286084(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain SWMUF35]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAATAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495