Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JK629_RS03675 Genome accession   NZ_CP068439
Coordinates   769687..771048 (-) Length   453 a.a.
NCBI ID   WP_202337281.1    Uniprot ID   -
Organism   Aequorivita iocasae strain KX20305     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764687..776048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK629_RS03660 (JK629_03660) - 766414..767184 (+) 771 WP_202337279.1 exodeoxyribonuclease III -
  JK629_RS03665 (JK629_03665) - 767181..768218 (+) 1038 WP_202337280.1 NADP(H)-dependent aldo-keto reductase -
  JK629_RS03670 (JK629_03670) - 768215..769579 (-) 1365 WP_202337980.1 acyl-CoA dehydrogenase family protein -
  JK629_RS03675 (JK629_03675) radA 769687..771048 (-) 1362 WP_202337281.1 DNA repair protein RadA Machinery gene
  JK629_RS03680 (JK629_03680) - 771096..773963 (+) 2868 WP_202337282.1 sensor histidine kinase -
  JK629_RS03685 (JK629_03685) - 773964..774617 (+) 654 WP_202337283.1 response regulator transcription factor -
  JK629_RS03690 (JK629_03690) - 774620..775768 (-) 1149 WP_202337284.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49859.36 Da        Isoelectric Point: 7.9150

>NTDB_id=529079 JK629_RS03675 WP_202337281.1 769687..771048(-) (radA) [Aequorivita iocasae strain KX20305]
MAKTKTTFFCQNCGAQYAKWQGQCNSCKEWNTIAEEVIQKAEKVSWKSSENTSKRVAKPQRVSEISTQAEARLNTKNNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIALQLPYKTLYVSGEESAQQIKMRAERIQPISENCFILTETKTQNIFRNI
EEIEPDIVVIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKNDEDLSGTAISATLEGMRPLMIEIQALVSSAVYGTP
QRSATGYNAKRLNMILAVLEKRAGFKLGAKDVFLNVTGGITVDDPAIDLAVVAAVLSSNIDIAIDKRLCFAAEVGLAGEV
RPVTRVEQRILEAEKLGFTSIVISKYCKIPKQNFHINIIKVAKVHDVVRHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=529079 JK629_RS03675 WP_202337281.1 769687..771048(-) (radA) [Aequorivita iocasae strain KX20305]
ATGGCCAAAACAAAGACAACATTTTTCTGCCAGAACTGTGGCGCCCAATATGCCAAATGGCAAGGGCAATGCAATTCCTG
TAAGGAATGGAACACCATAGCCGAAGAAGTAATCCAAAAAGCCGAAAAGGTTAGCTGGAAGTCATCCGAAAACACTTCCA
AGAGAGTTGCCAAACCACAGCGCGTTTCAGAAATTTCAACACAAGCTGAAGCGAGGCTGAATACAAAAAACAACGAATTG
AACCGTGTGCTCGGAGGCGGATTGGTTCCCGGTTCCCTAACGCTTTTGGGCGGTGAACCCGGAATTGGAAAGAGTACGTT
GATGCTTCAAATTGCGCTGCAACTTCCTTATAAAACACTCTATGTTTCGGGTGAAGAAAGTGCCCAGCAAATAAAAATGC
GAGCGGAACGAATCCAGCCTATTTCTGAAAACTGTTTCATTTTAACCGAAACAAAAACGCAAAATATTTTTAGAAATATT
GAAGAAATTGAACCCGATATTGTGGTGATTGATTCCATCCAAACGCTTCACACAGATTATATTGAAAGCACAGCGGGAAG
CATTTCGCAAATTAGGGAAACCACCGCCGAACTTATAAAATTTGCCAAGGAAACCGCAACACCGGTAATTTTAATAGGCC
ATATTACCAAAGACGGAAACATCGCCGGCCCAAAGATTTTGGAACATATGGTTGATACCGTTTTACAATTTGAAGGTGAC
CGAAACCATATTTATAGAATTCTTCGGGCCAATAAAAACCGTTTCGGAAGTACCAATGAGTTAGGTATTTATGAGATGCA
GGGAAGTGGCTTGCGTGAGGTTTCAAACCCTTCCGAAATTTTGATTTCTAAAAATGACGAAGATTTAAGCGGAACCGCAA
TTTCCGCAACTTTGGAAGGCATGCGCCCGTTGATGATTGAAATTCAAGCATTGGTGAGCAGTGCAGTTTACGGCACACCG
CAGCGAAGTGCCACGGGCTATAACGCTAAAAGGCTGAATATGATTCTTGCTGTTTTGGAAAAACGTGCAGGCTTCAAATT
GGGCGCAAAAGATGTCTTTTTGAATGTAACCGGGGGAATAACCGTTGACGATCCCGCAATTGATTTGGCAGTAGTTGCCG
CGGTACTTTCCTCAAATATTGATATTGCCATTGACAAGCGACTTTGCTTTGCCGCTGAGGTGGGTCTCGCTGGTGAAGTG
CGTCCCGTTACCCGTGTGGAACAACGTATTCTGGAAGCCGAAAAACTTGGGTTCACTTCTATTGTTATTTCAAAATATTG
CAAAATTCCGAAGCAAAACTTCCACATTAACATCATAAAAGTAGCAAAAGTGCACGATGTGGTGCGCCATCTTTTTGGGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(331-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(62-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.497
  radA Streptococcus pneumoniae Rx1

47.817

100

0.483
  radA Streptococcus pneumoniae D39

47.817

100

0.483
  radA Streptococcus pneumoniae R6

47.817

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.817

100

0.483
  radA Streptococcus mitis NCTC 12261

47.817

100

0.483
  radA Streptococcus mitis SK321

47.692

100

0.479