Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJQ59_RS10700 Genome accession   NZ_CP068434
Coordinates   2328906..2330267 (-) Length   453 a.a.
NCBI ID   WP_010810633.1    Uniprot ID   A0A367PNZ5
Organism   Cupriavidus necator strain C39.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2323906..2335267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ59_RS10675 (JJQ59_10675) - 2324442..2325404 (-) 963 WP_114130987.1 MurR/RpiR family transcriptional regulator -
  JJQ59_RS10680 (JJQ59_10680) - 2325379..2325669 (-) 291 WP_189374197.1 hypothetical protein -
  JJQ59_RS10685 (JJQ59_10685) - 2325689..2327623 (+) 1935 WP_114130988.1 ATP-binding cassette domain-containing protein -
  JJQ59_RS10690 (JJQ59_10690) - 2327710..2328195 (-) 486 WP_114130989.1 disulfide bond formation protein B -
  JJQ59_RS10695 (JJQ59_10695) - 2328339..2328902 (-) 564 WP_114130990.1 GNAT family N-acetyltransferase -
  JJQ59_RS10700 (JJQ59_10700) radA 2328906..2330267 (-) 1362 WP_010810633.1 DNA repair protein RadA Machinery gene
  JJQ59_RS10705 (JJQ59_10705) alr 2330363..2331484 (-) 1122 WP_114130991.1 alanine racemase -
  JJQ59_RS10710 (JJQ59_10710) lplT 2332055..2333373 (+) 1319 Protein_2137 lysophospholipid transporter LplT -
  JJQ59_RS10715 (JJQ59_10715) - 2333413..2334552 (-) 1140 WP_114130993.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48373.69 Da        Isoelectric Point: 7.2389

>NTDB_id=529046 JJQ59_RS10700 WP_010810633.1 2328906..2330267(-) (radA) [Cupriavidus necator strain C39.]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAESAANKRFQPLAASATVRKLSEIDAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPSLGLLAEIQLEKIQATLEV
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTIAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=529046 JJQ59_RS10700 WP_010810633.1 2328906..2330267(-) (radA) [Cupriavidus necator strain C39.]
TTGGCCAAGACCAAGACTGTCTATACGTGTACCGAATGCGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAGACGGTGGCCGAGTCCGCCGCGAACAAGCGCTTCCAGCCGCTGGCCGCCTCGGCCA
CGGTGCGCAAGCTGTCGGAGATCGATGCCGCTGACGTGCCGCGCTTCTCCAGCGGCATCGATGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGGGGGGTGGTGCTGATCGGCGGCGATCCCGGCATTGGCAAGTCCACGCTGCTGCTGCAGGC
CCTGGCCAACCTTGCGGGCCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCCGGTGCGCAAATTGCGCTGCGCGCGC
AGCGGTTGGGCGTGGAAAGCCCGTCACTGGGGCTGCTTGCCGAAATCCAGCTGGAGAAGATCCAGGCCACGCTGGAAGTG
GAAAAGCCCGAAGTCGCGGTGATCGACTCGATCCAGACGCTGTACTCCGAGGCGCTGACCTCTGCGCCGGGCTCGGTCGC
CCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATTGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCAGCCTGGCGGGTCCGCGCGTGCTGGAGCATATCGTCGATACGGTGCTGTATTTCGAGGGCGATACCCAT
TCGTCGCACCGGCTGATCCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAATGAGCTGGGTGTGTTTGCCATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGGAAACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGTCCGCTGCTGGTTGAGATCCAGGCGCTGGTCGATACCGCCCATGTACCCAACCCGCGCCGG
CTGGCGGTGGGCCTTGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCCTGCTTTGA
CCAGGACGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATTACTGAACCCGCCGCCGACCTCGCGGTGCTGCTGTCGATCC
ACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGCGAGATCCGGCCC
AGCCCGCGCGGGCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTTACGATCGCCGTGATTCCCAAGGCGAACGCGCC
CAAACAGAAGATCGACGGGCTCGAAGTGATTGCGGTGGAACGCATCGAGCAGGCCATCGACCGCGTGCGCCATCTGGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367PNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.327

99.779

0.512
  radA Streptococcus pneumoniae Rx1

46.813

100

0.47
  radA Streptococcus pneumoniae D39

46.813

100

0.47
  radA Streptococcus pneumoniae R6

46.813

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.813

100

0.47
  radA Streptococcus mitis SK321

46.916

100

0.47
  radA Streptococcus mitis NCTC 12261

46.593

100

0.468