Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B91_RS15455 Genome accession   NZ_CP082777
Coordinates   3174453..3175880 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli O25:H1 strain CU39ES-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3169453..3180880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B91_RS15415 (K8B91_15335) yeeW 3169637..3169831 (+) 195 WP_000988601.1 DUF5983 family protein -
  K8B91_RS15420 (K8B91_15340) - 3169877..3169957 (+) 81 Protein_3012 hypothetical protein -
  K8B91_RS24840 (K8B91_15345) - 3170246..3170419 (-) 174 WP_032082634.1 transposase domain-containing protein -
  K8B91_RS24845 (K8B91_15350) - 3170446..3170628 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K8B91_RS15435 (K8B91_15355) tmaR 3170729..3171058 (-) 330 WP_000450409.1 DUF496 family protein -
  K8B91_RS15440 (K8B91_15360) yeeA 3171230..3172288 (-) 1059 WP_001200890.1 FUSC family protein -
  K8B91_RS15445 (K8B91_15365) sbmC 3172486..3172959 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K8B91_RS15450 (K8B91_15370) dacD 3173078..3174244 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B91_RS15455 (K8B91_15375) sbcB 3174453..3175880 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  K8B91_RS15460 (K8B91_15380) plaP 3175954..3177312 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K8B91_RS15465 (K8B91_15385) yoeI 3177302..3177364 (-) 63 WP_010723108.1 membrane protein YoeI -
  K8B91_RS15470 (K8B91_15390) yeeY 3177579..3178508 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K8B91_RS15475 (K8B91_15395) yeeZ 3178554..3179378 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  K8B91_RS15480 (K8B91_15400) yoeB 3179461..3179715 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K8B91_RS15485 (K8B91_15405) yefM 3179712..3179963 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K8B91_RS15490 (K8B91_15410) hisL 3180246..3180296 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=529045 K8B91_RS15455 WP_000980604.1 3174453..3175880(+) (sbcB) [Escherichia coli O25:H1 strain CU39ES-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=529045 K8B91_RS15455 WP_000980604.1 3174453..3175880(+) (sbcB) [Escherichia coli O25:H1 strain CU39ES-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583