Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JJQ59_RS02055 Genome accession   NZ_CP068434
Coordinates   418381..419862 (-) Length   493 a.a.
NCBI ID   WP_114132155.1    Uniprot ID   A0A367PL15
Organism   Cupriavidus necator strain C39.     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413381..424862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ59_RS02025 (JJQ59_02025) - 413711..414370 (-) 660 WP_114132157.1 LON peptidase substrate-binding domain-containing protein -
  JJQ59_RS02030 (JJQ59_02030) rapZ 414462..415346 (-) 885 WP_114132156.1 RNase adapter RapZ -
  JJQ59_RS02035 (JJQ59_02035) - 415464..415856 (-) 393 WP_010814383.1 PsiF family protein -
  JJQ59_RS02040 (JJQ59_02040) hprK 416019..416990 (-) 972 WP_010814384.1 HPr(Ser) kinase/phosphatase -
  JJQ59_RS02045 (JJQ59_02045) ptsN 417071..417526 (-) 456 WP_010814385.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JJQ59_RS02050 (JJQ59_02050) hpf 417982..418332 (-) 351 WP_010814386.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JJQ59_RS02055 (JJQ59_02055) rpoN/rpoN1 418381..419862 (-) 1482 WP_114132155.1 RNA polymerase factor sigma-54 Machinery gene
  JJQ59_RS02060 (JJQ59_02060) lptB 419998..420798 (-) 801 WP_114132154.1 LPS export ABC transporter ATP-binding protein -
  JJQ59_RS02065 (JJQ59_02065) lptA 420852..421502 (-) 651 WP_114132153.1 lipopolysaccharide transport periplasmic protein LptA -
  JJQ59_RS02070 (JJQ59_02070) lptC 421603..422232 (-) 630 WP_114132152.1 LPS export ABC transporter periplasmic protein LptC -
  JJQ59_RS02075 (JJQ59_02075) - 422276..423259 (-) 984 WP_114132180.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54743.00 Da        Isoelectric Point: 4.8616

>NTDB_id=529038 JJQ59_RS02055 WP_114132155.1 418381..419862(-) (rpoN/rpoN1) [Cupriavidus necator strain C39.]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNLQSAPAPAPAEPQ
GNGEARADGAGDDDSYGDSGNGDDYGSSDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISARDKGLAI
FLIESLDDDGYLSASLEEICTELPEELEFEIDEVHAILTLLQSFDPPGVGARNAAECLALQLRRLTHPQRELALNIVTNH
LELLAVRDYTRLKKALQVDEVALKSAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRINDMY
AQILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFSHGEIAMRPLVLREIADTLGLHESTISR
VTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYRE
ALKIPAVNLRKSL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=529038 JJQ59_RS02055 WP_114132155.1 418381..419862(-) (rpoN/rpoN1) [Cupriavidus necator strain C39.]
ATGAAACCGTCGCTACAGCTCCGTCTTTCCCAGCATCTGGCCCTGACCCCGCAACTGCAGCAGTCGATCCGGCTGTTGCA
GCTCTCCACGCTGGAACTGCAGCAAGAGGTCGAACAGGCGCTGACGGAAAACCCGCTGCTCGAGCGCGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCGGCCGATGGCTCGGTCAACCTGCAGAGCGCACCGGCGCCCGCCCCGGCAGAGCCCCAG
GGCAATGGCGAGGCCCGCGCCGACGGCGCGGGTGACGACGACAGCTATGGCGACAGCGGCAACGGCGACGACTATGGCAG
CAGCGACTGGAGCCTGGACGACTTTGCCCGCCGCCCCCAGGGCGACGAGGACGAAAAAACGCCGATGCAGCTGCGCGAAG
CCGAGCCCACGCTGCGCGAGTACCTGATGGAGCAGCTCACGCCACTGAAGATCTCGGCGCGCGACAAGGGCCTGGCCATC
TTCCTGATCGAATCGCTCGACGACGATGGCTACCTGAGCGCGTCGCTTGAGGAGATCTGCACGGAGTTGCCGGAAGAACT
CGAGTTCGAGATCGACGAAGTCCACGCCATCCTCACGCTGCTGCAGAGCTTCGACCCGCCCGGCGTGGGTGCGCGCAACG
CCGCCGAGTGCCTGGCCCTGCAGTTGCGGCGCCTGACGCACCCGCAGCGCGAACTGGCGCTGAACATCGTCACCAACCAC
CTGGAGTTGCTCGCAGTACGCGACTACACGCGGCTGAAGAAGGCGCTGCAGGTCGATGAAGTGGCACTGAAGTCCGCACA
CGAACTGATCCGCTCGCTGGCGCCCTACCCCGGCCATGCCTACAGCCGCCCGGAAGCCGACTTCGTGGTGCCGGACGTGT
TCGTGCGCAAGGGTGGCGGCGGCTGGATCGCGCAGCTCAATCCGGATGTGATGCCGAGGCTGCGCATCAACGATATGTAT
GCGCAAATCCTGCGTGGCGCGAAGGGTGAGTCCGGCACGGCCGGGCTGCAGCAGAAGCTGCAGGAGGCGCGCTGGCTGAT
CAAGAATATCCAGCAAAGGTTCGACACAATCCTGCGTGTCTCGCAGGCCATTGTCGAGCGTCAAAAGAACTTTTTCAGTC
ACGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGTTTACACGAGTCAACCATCTCCCGG
GTGACGACCAATAAATATATGGCAACGCCGATGGGTACTTTCGAACTGAAGTACTTCTTCGGCAGCCACGTGTCCACCGA
AACCGGTGGCGCGGCTTCATCAACGGCCATCCGCGCCTTGATCAAGCAACTGATAGGAGCCGAAGACCCGAGGAATCCCC
TTTCCGACAGTCGCATTGCCGAACTGCTGGGTGAGCAAGGCTTTGTTGTTGCGCGCCGCACTGTTGCCAAGTATCGCGAA
GCCCTGAAGATCCCCGCAGTCAATCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-320)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367PL15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.641

100

0.809