Detailed information NTG0529037

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JJQ59_RS01940
• Genome accession: NZ_CP068434
• Coordinates: 394607..395767 (-)
• Length: 386 a.a.
• NCBI ID: WP_114132167.1
• Uniprot ID: -
• Organism: Cupriavidus necator strain C39.
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 389607..400767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJQ59_RS01915 (JJQ59_01915)	ntrB	389644..390549 (-)	906	WP_114132172.1	nitrate ABC transporter permease	-
JJQ59_RS01920 (JJQ59_01920)	-	390601..391911 (-)	1311	WP_114132171.1	CmpA/NrtA family ABC transporter substrate-binding protein	-
JJQ59_RS01925 (JJQ59_01925)	-	392277..392924 (-)	648	WP_114132170.1	ANTAR domain-containing response regulator	-
JJQ59_RS01930 (JJQ59_01930)	-	393180..393881 (+)	702	WP_114132169.1	fumarylacetoacetate hydrolase family protein	-
JJQ59_RS01935 (JJQ59_01935)	maiA	393886..394533 (+)	648	WP_114132168.1	maleylacetoacetate isomerase	-
JJQ59_RS01940 (JJQ59_01940)	pilA	394607..395767 (-)	1161	WP_114132167.1	signal recognition particle-docking protein FtsY	Machinery gene
JJQ59_RS01945 (JJQ59_01945)	-	395985..397532 (+)	1548	WP_114132166.1	M16 family metallopeptidase	-
JJQ59_RS01950 (JJQ59_01950)	-	397542..398924 (+)	1383	WP_114132165.1	M16 family metallopeptidase	-
JJQ59_RS01955 (JJQ59_01955)	rsmD	399007..399711 (+)	705	WP_013955460.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JJQ59_RS01960 (JJQ59_01960)	coaD	399952..400437 (+)	486	WP_010814369.1	pantetheine-phosphate adenylyltransferase	-
JJQ59_RS01965 (JJQ59_01965)	-	400506..400766 (+)	261	WP_010814370.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 40902.65 Da
• Isoelectric Point: 7.2847

>NTDB_id=529037 JJQ59_RS01940 WP_114132167.1 394607..395767(-) (pilA) [Cupriavidus necator strain C39.]
MFSFWKKRKAEPAPVEAPAPAPAPVEVPAPVPAPAPTPAPVPAPAPAPVPAQVPPPAPAPVAAPIPVPAPAPAEALELVP
PPTQTAEAKQGWMQRLRTGLSKTSRNIGTLFVGVKVDEALFEELETALLMADAGVEATEYLLGELRKRVKAERIETAEGV
KAALRELLIQLLRPLEKSMALGREQPLVMMIAGVNGAGKTTSIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLTIWGERN
NVTVVAQESGDPAAVIFDAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNAL
QQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKADEFADALLG

Nucleotide

• Length: 1161 bp

>NTDB_id=529037 JJQ59_RS01940 WP_114132167.1 394607..395767(-) (pilA) [Cupriavidus necator strain C39.]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAGCCCGCGCCCGTCGAGGCGCCAGCCCCGGCCCCCGCTCCGGTCGAGGT
CCCCGCCCCCGTACCGGCACCGGCCCCCACGCCTGCGCCAGTCCCTGCGCCCGCACCGGCACCGGTCCCCGCGCAAGTAC
CACCCCCTGCCCCAGCGCCCGTGGCGGCCCCTATCCCCGTGCCGGCGCCCGCACCGGCCGAAGCGCTCGAGCTGGTCCCG
CCGCCCACTCAGACCGCTGAAGCGAAGCAGGGCTGGATGCAGCGGCTGCGCACCGGGCTGTCCAAGACCAGCCGCAACAT
CGGCACGCTGTTCGTCGGCGTCAAGGTCGACGAGGCCCTGTTCGAGGAACTGGAAACCGCGCTGCTGATGGCCGATGCCG
GCGTCGAAGCCACCGAGTACCTGCTGGGCGAGCTGCGCAAGCGCGTCAAGGCCGAACGCATCGAGACCGCCGAAGGCGTC
AAGGCGGCACTGCGCGAGCTGCTGATCCAGCTGCTGCGGCCGCTGGAAAAGTCCATGGCGCTGGGCCGCGAGCAGCCGCT
GGTAATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGCGCTATG
ACCAGAAGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCGGCCGCGCGCGAGCAGCTGACGATCTGGGGCGAGCGCAAC
AACGTCACCGTGGTGGCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTCGACGCCGTCAATGCGGCCAAGGCGCGCGG
CATCGACATCGTCATGGCCGACACCGCCGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCAAGAAGGTCAAGC
GCGTGATCAGCAAGGCCATGCCGAGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAATACCGGGCAGAACGCCCTG
CAGCAAACCCGCGCCTTCGACGACGCGCTGGGCCTGACCGGCCTGATCGTGACCAAGCTCGACGGCACCGCCAAGGGCGG
TATCCTGGCGGCGATCGCGCGCCAGCGCCCGGTGCCGGTCTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGCAAC
CGTTCAAGGCGGACGAGTTCGCCGACGCGCTGCTGGGGTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (187-386)

• SRP54-type protein, helical bundle domain (SRP54_N) (111-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.962	100	0.549