Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B92_RS14245 Genome accession   NZ_CP082776
Coordinates   2923455..2924882 (+) Length   475 a.a.
NCBI ID   WP_000980614.1    Uniprot ID   -
Organism   Escherichia coli O4:H5 strain CU532-9     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2918455..2929882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B92_RS14205 (K8B92_14135) yeeW 2918640..2918834 (+) 195 WP_000988601.1 DUF5983 family protein -
  K8B92_RS14210 (K8B92_14140) - 2918880..2918960 (+) 81 Protein_2772 hypothetical protein -
  K8B92_RS14215 (K8B92_14145) - 2919249..2919395 (-) 147 Protein_2773 transposase domain-containing protein -
  K8B92_RS14220 (K8B92_14150) - 2919449..2919631 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K8B92_RS14225 (K8B92_14155) tmaR 2919732..2920061 (-) 330 WP_000450409.1 DUF496 family protein -
  K8B92_RS14230 (K8B92_14160) yeeA 2920233..2921291 (-) 1059 WP_001200894.1 FUSC family protein -
  K8B92_RS14235 (K8B92_14165) sbmC 2921489..2921962 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K8B92_RS14240 (K8B92_14170) dacD 2922081..2923247 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B92_RS14245 (K8B92_14175) sbcB 2923455..2924882 (+) 1428 WP_000980614.1 exodeoxyribonuclease I Machinery gene
  K8B92_RS14250 (K8B92_14180) tsuB 2924925..2925152 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K8B92_RS14255 (K8B92_14185) tsuA 2925166..2926224 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  K8B92_RS14260 (K8B92_14190) plaP 2926403..2927761 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K8B92_RS14265 (K8B92_14195) yoeI 2927751..2927813 (-) 63 WP_010723108.1 membrane protein YoeI -
  K8B92_RS14270 (K8B92_14200) yeeY 2928028..2928957 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K8B92_RS14275 (K8B92_14205) yeeZ 2929003..2929827 (-) 825 WP_000754740.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.74 Da        Isoelectric Point: 5.6054

>NTDB_id=528958 K8B92_RS14245 WP_000980614.1 2923455..2924882(+) (sbcB) [Escherichia coli O4:H5 strain CU532-9]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528958 K8B92_RS14245 WP_000980614.1 2923455..2924882(+) (sbcB) [Escherichia coli O4:H5 strain CU532-9]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581