Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JYE49_RS13110 Genome accession   NZ_CP068393
Coordinates   2916625..2917539 (+) Length   304 a.a.
NCBI ID   WP_093957965.1    Uniprot ID   -
Organism   Aristaeella hokkaidonensis strain R-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911625..2922539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYE49_RS13080 (JYE49_13045) rpmH 2912436..2912570 (+) 135 WP_084096432.1 50S ribosomal protein L34 -
  JYE49_RS13085 (JYE49_13050) rnpA 2912702..2913064 (+) 363 WP_093957960.1 ribonuclease P protein component -
  JYE49_RS13090 (JYE49_13055) yidD 2913061..2913303 (+) 243 WP_093957961.1 membrane protein insertion efficiency factor YidD -
  JYE49_RS13095 (JYE49_13060) - 2913310..2914314 (+) 1005 WP_093957962.1 YidC/Oxa1 family membrane protein insertase -
  JYE49_RS13100 (JYE49_13065) jag 2914311..2915219 (+) 909 WP_093957963.1 RNA-binding cell elongation regulator Jag/EloR -
  JYE49_RS13105 (JYE49_13070) serS 2915265..2916545 (+) 1281 WP_093957964.1 serine--tRNA ligase -
  JYE49_RS13110 (JYE49_13075) pilA 2916625..2917539 (+) 915 WP_093957965.1 signal recognition particle-docking protein FtsY Machinery gene
  JYE49_RS13115 (JYE49_13080) - 2917595..2918974 (+) 1380 WP_093957966.1 glycine--tRNA ligase -
  JYE49_RS13120 (JYE49_13085) - 2919067..2919792 (+) 726 WP_179217393.1 MBL fold metallo-hydrolase -
  JYE49_RS13125 (JYE49_13090) hemZ 2919821..2921263 (+) 1443 WP_093957968.1 coproporphyrinogen dehydrogenase HemZ -
  JYE49_RS13130 (JYE49_13095) dtd 2921342..2921791 (-) 450 WP_093957969.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33626.11 Da        Isoelectric Point: 5.3595

>NTDB_id=528941 JYE49_RS13110 WP_093957965.1 2916625..2917539(+) (pilA) [Aristaeella hokkaidonensis strain R-7]
MSEEKKKGLFARLREGLSKTRGNMTEKVDDMVRENRKIDDDFYEELEDILLMADCGLKATETIVDELKDRVKAGKVKDAA
EAREMLKQIMVEQMNIPRPPLKWPMVMLLVGVNGVGKTTTIGKLALRFQAIGRKVMLCAGDTFRAAAAEQLSVWAERARV
PIIKHAEGADPAAVVFDAIQSAKAQGVDLLIVDTAGRLHNKKNLMDELSKMRRVIDREYPEADTRCILVLDATTGQNGLM
QARAFKEVAEIGGIILSKLDGTAKGGIALAIRQELEVPVWYIGVGEGIDDLQPFDAKEFVEALF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=528941 JYE49_RS13110 WP_093957965.1 2916625..2917539(+) (pilA) [Aristaeella hokkaidonensis strain R-7]
ATGTCCGAAGAGAAGAAAAAGGGCCTTTTCGCGAGACTGCGGGAAGGACTGAGCAAAACCCGGGGAAACATGACCGAGAA
AGTCGACGACATGGTCAGGGAGAACCGGAAGATCGACGATGACTTCTATGAAGAGCTGGAAGATATCCTGCTCATGGCCG
ACTGCGGCCTGAAGGCCACTGAGACGATCGTGGATGAGCTGAAGGACCGGGTAAAGGCCGGCAAGGTCAAGGATGCTGCG
GAAGCCCGTGAGATGCTCAAGCAGATCATGGTGGAGCAGATGAATATTCCGCGACCCCCGCTGAAGTGGCCTATGGTGAT
GCTGCTGGTTGGCGTGAACGGTGTGGGCAAGACCACGACGATCGGCAAGCTGGCGCTGCGCTTCCAGGCTATCGGCCGGA
AGGTCATGCTGTGCGCGGGAGATACGTTCCGCGCAGCGGCTGCTGAACAGCTGAGCGTATGGGCAGAGCGGGCGAGGGTT
CCGATCATTAAGCATGCTGAAGGCGCGGATCCGGCTGCGGTGGTGTTTGACGCCATCCAGTCCGCCAAGGCCCAGGGTGT
GGACCTGCTGATCGTGGATACCGCCGGACGGCTGCATAACAAGAAGAACCTGATGGATGAGCTGAGCAAGATGCGCAGGG
TGATTGACCGGGAGTATCCGGAAGCAGATACCCGCTGCATCCTGGTGCTGGACGCCACCACAGGTCAGAACGGCCTTATG
CAGGCGCGTGCATTCAAGGAAGTCGCTGAGATCGGCGGCATTATCCTGTCGAAGCTGGACGGTACCGCCAAGGGCGGCAT
CGCGCTGGCCATCCGGCAGGAGCTGGAAGTGCCGGTATGGTACATTGGCGTGGGTGAAGGGATTGATGACCTGCAGCCCT
TTGACGCCAAGGAATTTGTGGAAGCGTTGTTCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(105-304)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.052

100

0.487