Detailed information NTG0528940

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JYE49_RS12500
• Genome accession: NZ_CP068393
• Coordinates: 2759884..2761254 (-)
• Length: 456 a.a.
• NCBI ID: WP_093957848.1
• Uniprot ID: -
• Organism: Aristaeella hokkaidonensis strain R-7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2754884..2766254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYE49_RS12490 (JYE49_12455)	-	2756561..2758384 (+)	1824	WP_093957846.1	ABC transporter ATP-binding protein	-
JYE49_RS12495 (JYE49_12460)	-	2758548..2759627 (-)	1080	WP_179217378.1	PIN/TRAM domain-containing protein	-
JYE49_RS12500 (JYE49_12465)	radA	2759884..2761254 (-)	1371	WP_093957848.1	DNA repair protein RadA	Machinery gene
JYE49_RS12505 (JYE49_12470)	-	2761375..2764311 (-)	2937	WP_093957849.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 48728.05 Da
• Isoelectric Point: 7.0725

>NTDB_id=528940 JYE49_RS12500 WP_093957848.1 2759884..2761254(-) (radA) [Aristaeella hokkaidonensis strain R-7]
MAKVKSTYACTACGYESPRWVGRCPGCGAWNTLEESLQAVPEKAAGKIAANQRPGTGAKPMSLKDIPEDTSVRTGTGISE
LDRVLGGGIVEGGLILIGGDPGIGKSTLLLQVCDHLAKSGKRTLYISGEESARQIKLRAARLGIESDLYVLAENALDAIE
EKIRELQPDTAVIDSIQTMYRPEMASAPGSVSQIREGTSLIMRLCKETGTSVFLVGHVTKDGAIAGPRMLEHMVDVVLYF
EGDRQQDYRLLRAVKNRFGSVNELGVFRMTGQGMQVVENPSEELLSLRAKGASGSTVFCGMEGSRPLLCDVQALTSPTFY
GTPRRAVNGADSGRVAMLLAVLEKRANQRTYNQDVYINVAGGLELSEPAADLALCVAVASSLKDKPVGPEIAVMGEVGLA
GEVRTIPQCERRIAECARLGFTTIVVPRSNARRISLPENVKVVGVDTVAQAMSVIF

Nucleotide

• Length: 1371 bp

>NTDB_id=528940 JYE49_RS12500 WP_093957848.1 2759884..2761254(-) (radA) [Aristaeella hokkaidonensis strain R-7]
GTGGCTAAGGTCAAGAGCACATATGCCTGTACCGCGTGCGGCTATGAAAGCCCCCGATGGGTCGGCCGCTGCCCTGGCTG
CGGAGCCTGGAACACCCTGGAGGAAAGCCTGCAGGCCGTTCCGGAAAAAGCGGCCGGAAAAATTGCCGCAAACCAGCGGC
CCGGCACCGGCGCAAAGCCCATGTCCCTGAAGGATATTCCGGAGGATACTTCCGTCCGGACAGGAACCGGCATCAGTGAG
CTGGACAGGGTCCTGGGCGGCGGAATCGTCGAGGGAGGCCTGATCCTCATCGGCGGTGATCCCGGCATCGGCAAAAGCAC
CCTGCTCCTCCAGGTATGTGACCATCTGGCAAAAAGCGGGAAGCGTACGCTGTATATCAGCGGCGAGGAATCCGCTCGTC
AGATCAAGCTGCGCGCCGCGCGGCTGGGGATTGAAAGCGATCTGTATGTACTGGCGGAAAACGCCCTGGATGCCATTGAA
GAAAAAATCCGGGAGCTGCAGCCTGACACAGCAGTCATCGACAGTATCCAGACCATGTACCGGCCGGAAATGGCCAGTGC
GCCCGGCAGCGTCAGCCAGATCCGGGAAGGCACAAGCCTCATCATGCGCCTGTGCAAGGAAACCGGAACCAGCGTATTCC
TGGTCGGCCACGTGACCAAGGACGGCGCGATTGCCGGTCCCCGGATGCTCGAACATATGGTGGACGTGGTATTATACTTT
GAAGGCGACCGGCAGCAGGATTACCGGCTGCTTCGCGCGGTCAAGAACCGCTTCGGCTCCGTCAACGAGCTGGGCGTGTT
CCGGATGACCGGCCAGGGGATGCAGGTCGTGGAAAACCCCAGCGAGGAGCTGCTGAGTCTCCGGGCCAAGGGCGCCAGCG
GAAGCACCGTCTTCTGCGGTATGGAAGGCAGCCGGCCGCTGCTGTGCGACGTACAGGCCCTGACCAGCCCCACCTTCTAC
GGTACTCCCCGCCGCGCGGTGAACGGTGCGGACAGCGGCCGGGTTGCCATGCTCCTGGCCGTACTGGAAAAGCGCGCCAA
CCAGCGGACCTATAACCAGGATGTATATATCAACGTGGCCGGCGGCCTGGAACTGAGCGAGCCGGCAGCAGACCTGGCCC
TGTGCGTGGCCGTTGCCTCCAGCCTGAAGGATAAGCCTGTCGGCCCTGAAATCGCCGTAATGGGCGAAGTCGGCCTGGCC
GGGGAGGTTCGTACTATTCCCCAGTGCGAGCGGCGGATTGCCGAGTGCGCCCGCCTGGGCTTCACCACCATCGTTGTTCC
GCGGTCCAACGCCCGCCGGATCAGCCTTCCGGAGAACGTCAAAGTCGTGGGAGTGGACACCGTCGCTCAGGCGATGAGCG
TAATCTTCTGA

Domains

Predicted by InterproScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (349-441)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (78-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.762	99.561	0.515
radA	Streptococcus pneumoniae Rx1	50.328	100	0.504
radA	Streptococcus pneumoniae D39	50.328	100	0.504
radA	Streptococcus pneumoniae R6	50.328	100	0.504
radA	Streptococcus pneumoniae TIGR4	50.328	100	0.504
radA	Streptococcus mitis NCTC 12261	50.109	100	0.502
radA	Streptococcus mitis SK321	50.109	100	0.502