Detailed information NTG0528885

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K8B89_RS19015
• Genome accession: NZ_CP082775
• Coordinates: 3812144..3813136 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25:H4 strain CU568-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3807144..3818136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8B89_RS18990 (K8B89_18865)	ygbN	3807871..3809235 (+)	1365	WP_000104433.1	GntP family transporter	-
K8B89_RS18995 (K8B89_18870)	-	3809378..3810421 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
K8B89_RS19000 (K8B89_18875)	-	3810646..3810897 (+)	252	Protein_3706	flavodoxin domain-containing protein	-
K8B89_RS19005 (K8B89_18880)	-	3810952..3811649 (+)	698	WP_223216367.1	IS1 family transposase	-
K8B89_RS19010 (K8B89_18885)	-	3811662..3811973 (+)	312	Protein_3708	NADPH-dependent FMN reductase	-
K8B89_RS19015 (K8B89_18890)	rpoS	3812144..3813136 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K8B89_RS19020 (K8B89_18895)	nlpD	3813199..3814293 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
K8B89_RS19025 (K8B89_18900)	pcm	3814478..3815104 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K8B89_RS19030 (K8B89_18905)	surE	3815098..3815859 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K8B89_RS19035 (K8B89_18910)	truD	3815840..3816889 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
K8B89_RS19040 (K8B89_18915)	ispF	3816886..3817365 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K8B89_RS19045 (K8B89_18920)	ispD	3817365..3818075 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=528885 K8B89_RS19015 WP_000081550.1 3812144..3813136(-) (rpoS) [Escherichia coli O25:H4 strain CU568-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=528885 K8B89_RS19015 WP_000081550.1 3812144..3813136(-) (rpoS) [Escherichia coli O25:H4 strain CU568-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715