Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JHW28_RS27005 Genome accession   NZ_CP068390
Coordinates   6024195..6025562 (-) Length   455 a.a.
NCBI ID   WP_007930034.1    Uniprot ID   A0AAX2EB22
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6019195..6030562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW28_RS26980 (JHW28_26980) - 6020034..6020231 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  JHW28_RS26985 (JHW28_26985) - 6020247..6022313 (-) 2067 WP_202338940.1 carbon starvation CstA family protein -
  JHW28_RS26990 (JHW28_26990) - 6022523..6022984 (+) 462 WP_124312189.1 methyltransferase family protein -
  JHW28_RS26995 (JHW28_26995) - 6023043..6023411 (+) 369 WP_009050966.1 PilZ domain-containing protein -
  JHW28_RS27000 (JHW28_27000) - 6023437..6024165 (-) 729 WP_202338941.1 hypothetical protein -
  JHW28_RS27005 (JHW28_27005) radA 6024195..6025562 (-) 1368 WP_007930034.1 DNA repair protein RadA Machinery gene
  JHW28_RS27010 (JHW28_27010) - 6025608..6026156 (-) 549 WP_124309611.1 ankyrin repeat domain-containing protein -
  JHW28_RS27015 (JHW28_27015) katB 6026229..6027770 (-) 1542 WP_202338942.1 catalase KatB -
  JHW28_RS27020 (JHW28_27020) mscL 6028057..6028470 (+) 414 WP_124312192.1 large-conductance mechanosensitive channel protein MscL -
  JHW28_RS27025 (JHW28_27025) - 6028524..6029300 (-) 777 WP_202338943.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48809.29 Da        Isoelectric Point: 7.1317

>NTDB_id=528883 JHW28_RS27005 WP_007930034.1 6024195..6025562(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=528883 JHW28_RS27005 WP_007930034.1 6024195..6025562(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAATG
CGGAGCCTGGAATACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGAGTGCTCGGTGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCTTGTGCAACATCGCGACCCGCATGCCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAATTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCTCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGACTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAACACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACCGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459