Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JKL50_RS12530 Genome accession   NZ_CP068389
Coordinates   2414469..2415011 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus altitudinis strain ws31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2409469..2420011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS12505 (JKL50_12505) - 2410474..2410884 (-) 411 WP_007497462.1 hypothetical protein -
  JKL50_RS12510 (JKL50_12510) - 2410900..2412219 (-) 1320 WP_076821505.1 hydrolase -
  JKL50_RS12515 (JKL50_12515) - 2412514..2412720 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  JKL50_RS12520 (JKL50_12520) ychF 2412936..2414036 (+) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  JKL50_RS12525 (JKL50_12525) rpsF 2414145..2414432 (+) 288 WP_008347557.1 30S ribosomal protein S6 -
  JKL50_RS12530 (JKL50_12530) ssbA 2414469..2415011 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  JKL50_RS12535 (JKL50_12535) rpsR 2415053..2415292 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  JKL50_RS12540 (JKL50_12540) - 2415492..2416457 (+) 966 WP_035704107.1 ABC transporter ATP-binding protein -
  JKL50_RS12545 (JKL50_12545) - 2416450..2417967 (+) 1518 WP_135226527.1 ABC transporter permease/substrate-binding protein -
  JKL50_RS12550 (JKL50_12550) - 2418157..2419128 (+) 972 WP_171465983.1 ring-cleaving dioxygenase -
  JKL50_RS12555 (JKL50_12555) - 2419125..2419736 (+) 612 WP_024718443.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=528845 JKL50_RS12530 WP_007497456.1 2414469..2415011(+) (ssbA) [Bacillus altitudinis strain ws31]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=528845 JKL50_RS12530 WP_007497456.1 2414469..2415011(+) (ssbA) [Bacillus altitudinis strain ws31]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361