Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JKL50_RS12185 Genome accession   NZ_CP068389
Coordinates   2350195..2350485 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345195..2355485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS12170 (JKL50_12170) - 2345379..2346581 (-) 1203 WP_017366433.1 G5 and 3D domain-containing protein -
  JKL50_RS12175 (JKL50_12175) - 2346826..2347593 (-) 768 WP_017359325.1 TatD family hydrolase -
  JKL50_RS12180 (JKL50_12180) metG 2347675..2349675 (-) 2001 WP_035704074.1 methionine--tRNA ligase -
  JKL50_RS12185 (JKL50_12185) abrB 2350195..2350485 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JKL50_RS12190 (JKL50_12190) rsmI 2350530..2351411 (-) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JKL50_RS12195 (JKL50_12195) - 2351386..2351685 (-) 300 WP_017359327.1 GIY-YIG nuclease family protein -
  JKL50_RS12200 (JKL50_12200) - 2351672..2352415 (-) 744 WP_046527641.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JKL50_RS12205 (JKL50_12205) yabA 2352471..2352824 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  JKL50_RS12210 (JKL50_12210) - 2352839..2353666 (-) 828 WP_007496230.1 PSP1 domain-containing protein -
  JKL50_RS12215 (JKL50_12215) holB 2353669..2354658 (-) 990 WP_017359329.1 DNA polymerase III subunit delta' -
  JKL50_RS12220 (JKL50_12220) - 2354670..2355110 (-) 441 WP_008341898.1 YaaR family protein -
  JKL50_RS12225 (JKL50_12225) - 2355123..2355452 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=528842 JKL50_RS12185 WP_087975202.1 2350195..2350485(+) (abrB) [Bacillus altitudinis strain ws31]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=528842 JKL50_RS12185 WP_087975202.1 2350195..2350485(+) (abrB) [Bacillus altitudinis strain ws31]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGACGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938