Detailed information NTG0528835

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: K8B89_RS01040
• Genome accession: NZ_CP082775
• Coordinates: 211386..212411 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli O25:H4 strain CU568-3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 206386..217411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8B89_RS01010 (K8B89_01005)	zapB	206470..206715 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
K8B89_RS01015 (K8B89_01010)	rraA	206800..207285 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
K8B89_RS01020 (K8B89_01015)	menA	207378..208304 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
K8B89_RS01025 (K8B89_01020)	hslU	208371..209702 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
K8B89_RS01030 (K8B89_01025)	hslV	209712..210242 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
K8B89_RS01035 (K8B89_01030)	ftsN	210335..211294 (-)	960	WP_000068834.1	cell division protein FtsN	-
K8B89_RS01040 (K8B89_01035)	cytR	211386..212411 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
K8B89_RS01045 (K8B89_01040)	priA	212567..214765 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
K8B89_RS01050 (K8B89_01045)	rpmE	214968..215180 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
K8B89_RS01055 (K8B89_01050)	yiiX	215241..215849 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
K8B89_RS01060 (K8B89_01055)	metJ	215909..216226 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=528835 K8B89_RS01040 WP_000644908.1 211386..212411(-) (cytR) [Escherichia coli O25:H4 strain CU568-3]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=528835 K8B89_RS01040 WP_000644908.1 211386..212411(-) (cytR) [Escherichia coli O25:H4 strain CU568-3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625