Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JKL50_RS05515 Genome accession   NZ_CP068389
Coordinates   1044425..1044703 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain ws31     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039425..1049703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS05500 (JKL50_05500) - 1041415..1042083 (-) 669 WP_008345123.1 potassium channel family protein -
  JKL50_RS05505 (JKL50_05505) - 1042121..1042963 (-) 843 WP_072367709.1 gamma-glutamylcyclotransferase -
  JKL50_RS05510 (JKL50_05510) - 1042991..1044280 (-) 1290 WP_072367708.1 ATP-binding protein -
  JKL50_RS05515 (JKL50_05515) abrB 1044425..1044703 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JKL50_RS05520 (JKL50_05520) mreBH 1044980..1045987 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  JKL50_RS05525 (JKL50_05525) - 1046062..1046193 (+) 132 WP_003210922.1 protein YkpC -
  JKL50_RS05530 (JKL50_05530) - 1046300..1047532 (+) 1233 WP_202734519.1 aminopeptidase -
  JKL50_RS05535 (JKL50_05535) - 1047573..1049192 (-) 1620 WP_046343439.1 ABC-F family ATP-binding cassette domain-containing protein -
  JKL50_RS05540 (JKL50_05540) - 1049337..1049612 (+) 276 WP_008345136.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=528818 JKL50_RS05515 WP_017359400.1 1044425..1044703(-) (abrB) [Bacillus altitudinis strain ws31]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=528818 JKL50_RS05515 WP_017359400.1 1044425..1044703(-) (abrB) [Bacillus altitudinis strain ws31]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543