Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JKL50_RS03395 Genome accession   NZ_CP068389
Coordinates   624712..625092 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 619712..630092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS03360 (JKL50_03360) - 620299..620529 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  JKL50_RS03365 (JKL50_03365) - 620599..621246 (-) 648 WP_019744126.1 YneB family resolvase-like protein -
  JKL50_RS03370 (JKL50_03370) yneA 621264..621575 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  JKL50_RS03375 (JKL50_03375) lexA 621735..622355 (+) 621 WP_035700932.1 transcriptional repressor LexA -
  JKL50_RS03380 (JKL50_03380) - 622403..622846 (-) 444 WP_008343821.1 hypothetical protein -
  JKL50_RS03385 (JKL50_03385) - 623143..623685 (+) 543 WP_008343822.1 IseA DL-endopeptidase inhibitor family protein -
  JKL50_RS03390 (JKL50_03390) - 623720..624568 (-) 849 WP_202734425.1 STAS domain-containing protein -
  JKL50_RS03395 (JKL50_03395) nucA/comI 624712..625092 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JKL50_RS03400 (JKL50_03400) - 625320..627314 (-) 1995 WP_202734426.1 glycosyltransferase family 39 protein -
  JKL50_RS03405 (JKL50_03405) - 627461..628369 (-) 909 WP_008343827.1 trypsin-like serine peptidase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=528813 JKL50_RS03395 WP_224559893.1 624712..625092(-) (nucA/comI) [Bacillus altitudinis strain ws31]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=528813 JKL50_RS03395 WP_224559893.1 624712..625092(-) (nucA/comI) [Bacillus altitudinis strain ws31]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556