Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JKL50_RS02020 Genome accession   NZ_CP068389
Coordinates   355340..355975 (-) Length   211 a.a.
NCBI ID   WP_202734697.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350340..360975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS02000 (JKL50_02000) - 350722..351426 (+) 705 WP_008344601.1 DnaD domain-containing protein -
  JKL50_RS02005 (JKL50_02005) nth 351444..352106 (+) 663 WP_008344602.1 endonuclease III -
  JKL50_RS02010 (JKL50_02010) - 352103..352612 (+) 510 WP_202734376.1 YpoC family protein -
  JKL50_RS02015 (JKL50_02015) - 352648..355320 (-) 2673 WP_202734377.1 PBP1A family penicillin-binding protein -
  JKL50_RS02020 (JKL50_02020) recU 355340..355975 (-) 636 WP_202734697.1 Holliday junction resolvase RecU Machinery gene
  JKL50_RS02025 (JKL50_02025) - 356022..356978 (+) 957 WP_202734378.1 DUF2515 domain-containing protein -
  JKL50_RS02030 (JKL50_02030) sspM 357002..357106 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  JKL50_RS02035 (JKL50_02035) - 357303..357536 (+) 234 WP_231131595.1 DUF5446 family protein -
  JKL50_RS02040 (JKL50_02040) - 357586..357966 (+) 381 WP_231493314.1 YppE family protein -
  JKL50_RS02045 (JKL50_02045) - 358075..358527 (+) 453 WP_017359729.1 YppG family protein -
  JKL50_RS02050 (JKL50_02050) - 358549..358968 (-) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  JKL50_RS02055 (JKL50_02055) - 359137..359643 (+) 507 WP_065460619.1 PTS sugar transporter subunit IIA -
  JKL50_RS02060 (JKL50_02060) - 359693..360811 (-) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24325.58 Da        Isoelectric Point: 9.6582

>NTDB_id=528812 JKL50_RS02020 WP_202734697.1 355340..355975(-) (recU) [Bacillus altitudinis strain ws31]
MIRYPNGKSYQPIQQTGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=528812 JKL50_RS02020 WP_202734697.1 355340..355975(-) (recU) [Bacillus altitudinis strain ws31]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAACTGGGACAAAAAAAAGAATTAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTATTCTTCTTTTGGGAGCGGCAGCAG
CAAAATGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697