Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JKL50_RS00550 Genome accession   NZ_CP068389
Coordinates   92625..93395 (+) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 87625..98395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS00520 (JKL50_00520) - 87931..90045 (+) 2115 WP_411859184.1 HD family phosphohydrolase -
  JKL50_RS00525 (JKL50_00525) ybeY 90046..90525 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  JKL50_RS00530 (JKL50_00530) - 90503..90889 (+) 387 WP_008342413.1 diacylglycerol kinase family protein -
  JKL50_RS00535 (JKL50_00535) - 91002..91400 (+) 399 WP_008342410.1 cytidine deaminase -
  JKL50_RS00540 (JKL50_00540) era 91393..92298 (+) 906 WP_007501305.1 GTPase Era -
  JKL50_RS00545 (JKL50_00545) - 92446..92589 (+) 144 WP_008342408.1 YqzL family protein -
  JKL50_RS00550 (JKL50_00550) recO 92625..93395 (+) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  JKL50_RS00555 (JKL50_00555) glyQ 93725..94612 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  JKL50_RS00560 (JKL50_00560) glyS 94605..96650 (+) 2046 WP_202734339.1 glycine--tRNA ligase subunit beta -
  JKL50_RS00565 (JKL50_00565) - 96817..97455 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  JKL50_RS00570 (JKL50_00570) - 97481..98302 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=528807 JKL50_RS00550 WP_007501304.1 92625..93395(+) (recO) [Bacillus altitudinis strain ws31]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=528807 JKL50_RS00550 WP_007501304.1 92625..93395(+) (recO) [Bacillus altitudinis strain ws31]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758