Detailed information NTG0528799

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K8B88_RS18915
• Genome accession: NZ_CP082774
• Coordinates: 3847393..3848385 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O16:H6 strain CU37RT-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3842393..3853385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8B88_RS18895 (K8B88_18820)	ygbM	3843024..3843800 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
K8B88_RS18900 (K8B88_18825)	ygbN	3843889..3845253 (+)	1365	WP_000104433.1	GntP family transporter	-
K8B88_RS18905 (K8B88_18830)	-	3845396..3846439 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
K8B88_RS18910 (K8B88_18835)	-	3846664..3847215 (+)	552	WP_001179442.1	flavodoxin family protein	-
K8B88_RS18915 (K8B88_18840)	rpoS	3847393..3848385 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K8B88_RS18920 (K8B88_18845)	nlpD	3848448..3849542 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K8B88_RS18925 (K8B88_18850)	pcm	3849727..3850353 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K8B88_RS18930 (K8B88_18855)	surE	3850347..3851108 (-)	762	WP_016247751.1	5'/3'-nucleotidase SurE	-
K8B88_RS18935 (K8B88_18860)	truD	3851089..3852138 (-)	1050	WP_021524450.1	tRNA pseudouridine(13) synthase TruD	-
K8B88_RS18940 (K8B88_18865)	ispF	3852135..3852614 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K8B88_RS18945 (K8B88_18870)	ispD	3852614..3853324 (-)	711	WP_021524451.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=528799 K8B88_RS18915 WP_000081550.1 3847393..3848385(-) (rpoS) [Escherichia coli O16:H6 strain CU37RT-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=528799 K8B88_RS18915 WP_000081550.1 3847393..3848385(-) (rpoS) [Escherichia coli O16:H6 strain CU37RT-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715