Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B88_RS14975 Genome accession   NZ_CP082774
Coordinates   3035705..3037132 (+) Length   475 a.a.
NCBI ID   WP_072251764.1    Uniprot ID   -
Organism   Escherichia coli O16:H6 strain CU37RT-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3030705..3042132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B88_RS14945 (K8B88_14890) pduU 3031083..3031433 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  K8B88_RS14950 (K8B88_14895) - 3031438..3031881 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  K8B88_RS14955 (K8B88_14900) tmaR 3031981..3032310 (-) 330 WP_000450409.1 DUF496 family protein -
  K8B88_RS14960 (K8B88_14905) yeeA 3032482..3033540 (-) 1059 WP_001200890.1 FUSC family protein -
  K8B88_RS14965 (K8B88_14910) sbmC 3033738..3034211 (-) 474 WP_021524294.1 DNA gyrase inhibitor SbmC -
  K8B88_RS14970 (K8B88_14915) dacD 3034330..3035496 (-) 1167 WP_021538052.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B88_RS14975 (K8B88_14920) sbcB 3035705..3037132 (+) 1428 WP_072251764.1 exodeoxyribonuclease I Machinery gene
  K8B88_RS14980 (K8B88_14925) plaP 3037206..3038564 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K8B88_RS14985 (K8B88_14930) yoeI 3038554..3038616 (-) 63 WP_010723108.1 membrane protein YoeI -
  K8B88_RS14990 (K8B88_14935) yeeY 3038831..3039760 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  K8B88_RS14995 (K8B88_14940) yeeZ 3039806..3040630 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  K8B88_RS15000 (K8B88_14945) yoeB 3040713..3040967 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K8B88_RS15005 (K8B88_14950) yefM 3040964..3041215 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K8B88_RS15010 (K8B88_14955) hisL 3041498..3041548 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.83 Da        Isoelectric Point: 5.4699

>NTDB_id=528786 K8B88_RS14975 WP_072251764.1 3035705..3037132(+) (sbcB) [Escherichia coli O16:H6 strain CU37RT-2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANCIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLQALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528786 K8B88_RS14975 WP_072251764.1 3035705..3037132(+) (sbcB) [Escherichia coli O16:H6 strain CU37RT-2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATTGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACAGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-189)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581