Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K8B88_RS04335 Genome accession   NZ_CP082774
Coordinates   900908..902290 (+) Length   460 a.a.
NCBI ID   WP_021538265.1    Uniprot ID   -
Organism   Escherichia coli O16:H6 strain CU37RT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895908..907290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B88_RS04315 (K8B88_04295) yjjJ 896765..898096 (+) 1332 WP_001293112.1 type II toxin-antitoxin system HipA family toxin YjjJ -
  K8B88_RS04320 (K8B88_04300) lplA 898097..899113 (-) 1017 WP_000105871.1 lipoate--protein ligase LplA -
  K8B88_RS04325 (K8B88_04305) ytjB 899141..899785 (-) 645 WP_000124608.1 YtjB family periplasmic protein -
  K8B88_RS04330 (K8B88_04310) serB 899891..900859 (+) 969 WP_001132964.1 phosphoserine phosphatase -
  K8B88_RS04335 (K8B88_04315) radA/sms 900908..902290 (+) 1383 WP_021538265.1 DNA repair protein RadA Machinery gene
  K8B88_RS04340 (K8B88_04320) nadR 902311..903543 (+) 1233 WP_000093834.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  K8B88_RS04345 (K8B88_04325) - 903635..903967 (+) 333 WP_000513550.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K8B88_RS04350 (K8B88_04330) nadS 903969..904253 (+) 285 WP_000007436.1 NadS family protein -
  K8B88_RS04355 (K8B88_04335) ettA 904309..905976 (-) 1668 WP_000046754.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49472.04 Da        Isoelectric Point: 7.1936

>NTDB_id=528761 K8B88_RS04335 WP_021538265.1 900908..902290(+) (radA/sms) [Escherichia coli O16:H6 strain CU37RT-2]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVTIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=528761 K8B88_RS04335 WP_021538265.1 900908..902290(+) (radA/sms) [Escherichia coli O16:H6 strain CU37RT-2]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGC
CTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCAGCGTCGCCAACGGTGGCGCGTAACGAGCGTCTCAGTGGCT
ATGCCGGTAGCGCCGGAGTGGCAAAAGTCCAGAAACTTTCCGACATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGA
TTTAAAGAGTTCGACCGCGTATTAGGCGGCGGCGTGGTGCCGGGAAGCGCCATTCTGATTGGCGGTAACCCTGGTGCGGG
GAAATCCACGCTGTTGCTGCAAACGCTGTGCAAACTGGCGCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTTAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCCATCCAGGTGATGCATATGGCGGATGT
ACAATCATCGCCTGGCAGCGTGGCACAGGTGCGTGAAACGGCGGCTTATCTGACGCGCTTCGCCAAAACGCGCGGTGTGA
CGATTGTCATGGTCGGGCACGTAACCAAAGATGGCTCGCTGGCTGGCCCTAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTTTTGGATGGTGATGCCGACTCACGTTTTCGCACCTTACGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGTGTCTTCGCAATGACCGAGCAGGGGCTGCGTGAAGTCAGCAACCCTTCGGCAATTTTCTTAAGTCGCGGCGATGAAG
TGACCTCCGGTAGCTCAGTGATGGTAGTGTGGGAAGGAACGCGTCCGCTGCTGGTGGAGATTCAGGCGCTCGTCGATCAC
TCGATGATGGCGAATCCACGCCGCGTGGCAGTCGGGCTGGAGCAAAACCGTCTGGCAATCCTGCTGGCGGTGCTTCACCG
TCACGGTGGTCTACAAATGGCCGATCAGGATGTGTTTGTTAACGTGGTCGGTGGCGTGAAGGTGACGGAAACCAGTGCCG
ATTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGTGACAGACCGCTACCGCAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGCCAGGAACGAATCTCAGAAGCGGCGAAACACGGTTTTCGCCGGGC
AATTGTTCCGGCAGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.827

99.348

0.465
  radA Streptococcus mitis SK321

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428
  radA Streptococcus mitis NCTC 12261

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428