Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K8B88_RS00060 Genome accession   NZ_CP082774
Coordinates   12505..13497 (+) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli O16:H6 strain CU37RT-2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7505..18497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B88_RS00035 (K8B88_00035) rbsD 7629..8048 (+) 420 WP_001346607.1 D-ribose pyranase -
  K8B88_RS00040 (K8B88_00040) rbsA 8056..9561 (+) 1506 WP_000387779.1 ribose ABC transporter ATP-binding protein RbsA -
  K8B88_RS00045 (K8B88_00045) rbsC 9566..10531 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  K8B88_RS00050 (K8B88_00050) rbsB 10556..11446 (+) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  K8B88_RS00055 (K8B88_00055) rbsK 11572..12501 (+) 930 WP_001361088.1 ribokinase -
  K8B88_RS00060 (K8B88_00060) cytR 12505..13497 (+) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  K8B88_RS00065 (K8B88_00065) mdtD 13463..14890 (-) 1428 WP_021524641.1 multidrug transporter subunit MdtD -
  K8B88_RS00070 (K8B88_00070) yieP 14913..15605 (-) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=528739 K8B88_RS00060 WP_000224462.1 12505..13497(+) (cytR) [Escherichia coli O16:H6 strain CU37RT-2]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=528739 K8B88_RS00060 WP_000224462.1 12505..13497(+) (cytR) [Escherichia coli O16:H6 strain CU37RT-2]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGAGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364