Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JK151_RS11170 Genome accession   NZ_CP068285
Coordinates   2345210..2346574 (+) Length   454 a.a.
NCBI ID   WP_201853471.1    Uniprot ID   -
Organism   Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340210..2351574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK151_RS11150 (JK151_11150) rimI 2340555..2341082 (+) 528 WP_078221616.1 ribosomal protein S18-alanine N-acetyltransferase -
  JK151_RS11155 (JK151_11155) - 2341153..2341982 (+) 830 Protein_2227 uracil-DNA glycosylase -
  JK151_RS11160 (JK151_11160) lplT 2342052..2343368 (-) 1317 WP_048817430.1 lysophospholipid transporter LplT -
  JK151_RS11165 (JK151_11165) alr 2343998..2345125 (+) 1128 WP_078221615.1 alanine racemase -
  JK151_RS11170 (JK151_11170) radA 2345210..2346574 (+) 1365 WP_201853471.1 DNA repair protein RadA Machinery gene
  JK151_RS11175 (JK151_11175) - 2346667..2347146 (+) 480 WP_013212659.1 disulfide bond formation protein B -
  JK151_RS11180 (JK151_11180) - 2347424..2348530 (-) 1107 WP_197331463.1 CaiB/BaiF CoA transferase family protein -
  JK151_RS11185 (JK151_11185) - 2348562..2350508 (-) 1947 WP_099091592.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48318.73 Da        Isoelectric Point: 7.6668

>NTDB_id=528735 JK151_RS11170 WP_201853471.1 2345210..2346574(+) (radA) [Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVESVAQPTAGARFQSLAANATVRKLADIDAVDVPRFSSGIDEFDRVL
GGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAASRRVLYVSGEESGAQIALRARRLGIESPNLALLAEIQLERIQATIEA
EKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRVAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNPRR
LAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEIRP
TPRGQERLKEAAKLGFSIAMIPKSNAPKQPVDGLQVIAVERIEQAIDRVRGLET

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=528735 JK151_RS11170 WP_201853471.1 2345210..2346574(+) (radA) [Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAATGCGGTGGCACGTCACCGAAATGGGCGGGGCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAAGCGTGGCGCAGCCGACCGCCGGCGCGCGTTTCCAGTCGCTGGCGGCGAACGCCA
CGGTGCGTAAGCTGGCGGACATCGACGCGGTGGACGTGCCGCGCTTCTCCAGCGGCATCGATGAATTCGATCGCGTGCTG
GGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGGC
GCTGTCCAACCTGGCGGCCAGCCGGCGCGTGCTGTACGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGCGGGCGC
GGCGGTTGGGTATCGAAAGCCCGAACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGCGCATCCAGGCGACCATCGAGGCG
GAGAAGCCCGAGGTGGTCGTCATCGATTCGATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTCGGTGGC
CCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCGTCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCGCACTGGCGGGCCCGCGCGTGCTGGAGCACATTGTCGACACGGTGCTGTATTTCGAAGGCGATACGCAT
TCGGCCTACCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGCCATGACCGAGCG
CGGCCTGCGCGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATGCGGCGGGCGTGCCGAACCCTCGGCGG
CTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATCGCCTGCTTCGA
CCAGGATGTGTTCCTCAATGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGGCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAGATCGGGCTGGCCGGCGAGATCCGCCCG
ACGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCATGATCCCCAAGTCGAACGCGCC
CAAGCAGCCGGTCGACGGCCTGCAGGTGATTGCCGTCGAGCGCATCGAGCAGGCGATTGACCGGGTGCGCGGGCTGGAAA
CTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-446)

AAA domain (AAA_25)

(62-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

47.033

100

0.471
  radA Streptococcus pneumoniae D39

47.033

100

0.471
  radA Streptococcus pneumoniae R6

47.033

100

0.471
  radA Streptococcus pneumoniae TIGR4

47.033

100

0.471
  radA Streptococcus mitis SK321

47.228

99.339

0.469
  radA Streptococcus mitis NCTC 12261

47.007

99.339

0.467