Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U712_RS06475 Genome accession   NC_022898
Coordinates   1278903..1280039 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis PY79     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273903..1285039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U712_RS06455 (U712_06435) uxaA 1274353..1275846 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  U712_RS06460 (U712_06440) yjnA 1275885..1276649 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  U712_RS06465 (U712_06445) bstD 1276874..1277338 (-) 465 WP_003245144.1 DinB family protein -
  U712_RS06470 (U712_06450) yjoB 1277487..1278758 (+) 1272 WP_003245490.1 ATPase YjoB -
  U712_RS06475 (U712_06455) rapC 1278903..1280039 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  U712_RS06480 (U712_06460) phrA 1280029..1280163 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  U712_RS06485 (U712_06465) yjpA 1280194..1280451 (-) 258 WP_003232731.1 YciI family protein -
  U712_RS06490 (U712_06470) xlyB 1280572..1281525 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  U712_RS06495 (U712_06475) yjqA 1281565..1281942 (-) 378 WP_003245254.1 PH domain-containing protein -
  U712_RS06500 (U712_06480) pghB 1282048..1282650 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  U712_RS06505 (U712_06485) xpdC 1282727..1283563 (+) 837 WP_003245071.1 manganese catalase family protein -
  U712_RS06510 (U712_06490) xkdA 1283607..1284203 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  U712_RS06515 (U712_06495) xre 1284366..1284707 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=52872 U712_RS06475 WP_010886491.1 1278903..1280039(+) (rapC) [Bacillus subtilis PY79]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=52872 U712_RS06475 WP_010886491.1 1278903..1280039(+) (rapC) [Bacillus subtilis PY79]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418

Multiple sequence alignment