Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B87_RS14405 Genome accession   NZ_CP082773
Coordinates   2962976..2964403 (+) Length   475 a.a.
NCBI ID   WP_087602614.1    Uniprot ID   -
Organism   Escherichia coli O99:H6 strain CU42ET-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2957976..2969403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B87_RS14365 (K8B87_14330) yeeW 2958160..2958354 (+) 195 WP_000988600.1 DUF5983 family protein -
  K8B87_RS14370 (K8B87_14335) - 2958400..2958480 (+) 81 Protein_2803 hypothetical protein -
  K8B87_RS23755 (K8B87_14340) - 2958769..2958942 (-) 174 WP_032082634.1 transposase domain-containing protein -
  K8B87_RS23760 (K8B87_14345) - 2958969..2959151 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K8B87_RS14385 (K8B87_14350) tmaR 2959252..2959581 (-) 330 WP_045177570.1 DUF496 family protein -
  K8B87_RS14390 (K8B87_14355) yeeA 2959753..2960811 (-) 1059 WP_234257579.1 FUSC family protein -
  K8B87_RS14395 (K8B87_14360) sbmC 2961009..2961482 (-) 474 WP_061353310.1 DNA gyrase inhibitor SbmC -
  K8B87_RS14400 (K8B87_14365) dacD 2961601..2962767 (-) 1167 WP_087602613.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B87_RS14405 (K8B87_14370) sbcB 2962976..2964403 (+) 1428 WP_087602614.1 exodeoxyribonuclease I Machinery gene
  K8B87_RS14410 (K8B87_14375) tsuB 2964446..2964673 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K8B87_RS14415 (K8B87_14380) tsuA 2964687..2965745 (-) 1059 WP_042343276.1 thiosulfate utilization transporter TsuA/YeeE -
  K8B87_RS14420 (K8B87_14385) plaP 2965924..2967282 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K8B87_RS14425 (K8B87_14390) yoeI 2967272..2967334 (-) 63 WP_097433929.1 membrane protein YoeI -
  K8B87_RS14430 (K8B87_14395) yeeY 2967549..2968478 (-) 930 WP_023565113.1 LysR substrate-binding domain-containing protein -
  K8B87_RS14435 (K8B87_14400) yeeZ 2968524..2969348 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54508.88 Da        Isoelectric Point: 5.4736

>NTDB_id=528697 K8B87_RS14405 WP_087602614.1 2962976..2964403(+) (sbcB) [Escherichia coli O99:H6 strain CU42ET-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFAPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528697 K8B87_RS14405 WP_087602614.1 2962976..2964403(+) (sbcB) [Escherichia coli O99:H6 strain CU42ET-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCGGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATATCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTGCACCTTCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGTTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585