Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABCA12_RS14980 Genome accession   NZ_CP068253
Coordinates   3141853..3143004 (+) Length   383 a.a.
NCBI ID   WP_004905510.1    Uniprot ID   S7XRZ8
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3136853..3148004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14960 (ABCA12_3051) - 3137765..3138526 (+) 762 WP_075695882.1 hypothetical protein -
  ABCA12_RS14965 (ABCA12_3052) - 3138573..3140669 (-) 2097 WP_125272748.1 TonB-dependent copper receptor -
  ABCA12_RS14970 (ABCA12_3053) - 3140743..3141180 (-) 438 WP_042892177.1 DUF2946 family protein -
  ABCA12_RS14975 (ABCA12_3054) def 3141202..3141732 (-) 531 WP_004905508.1 peptide deformylase -
  ABCA12_RS14980 (ABCA12_3055) tsaP 3141853..3143004 (+) 1152 WP_004905510.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABCA12_RS14985 (ABCA12_3056) dprA 3143014..3144141 (+) 1128 WP_005403958.1 DNA-processing protein DprA Machinery gene
  ABCA12_RS14990 (ABCA12_3057) - 3144179..3144748 (+) 570 WP_042892180.1 Sua5/YciO/YrdC/YwlC family protein -
  ABCA12_RS14995 (ABCA12_3058) - 3145142..3146062 (-) 921 WP_042892181.1 DMT family transporter -
  ABCA12_RS15000 (ABCA12_3059) - 3146166..3146831 (-) 666 WP_042892182.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41829.95 Da        Isoelectric Point: 9.0745

>NTDB_id=528648 ABCA12_RS14980 WP_004905510.1 3141853..3143004(+) (tsaP) [Acinetobacter junii strain CAM121]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=528648 ABCA12_RS14980 WP_004905510.1 3141853..3143004(+) (tsaP) [Acinetobacter junii strain CAM121]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTCAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGTTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGATGGTTGTGACGGTATTATTCGTCGTTATACAGGTGGCGGAACAACTTTAC
GTCCGCAAGTACGTATCGAAGCATTGAACAATAGTGTGCCTGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCAGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTGCTTGCAGGCAA
AGGACAAAGTGTTTACGTCCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTTGATGAGCAAGGCAAAAAGCAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACTACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTACGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGTGGTACTGCTGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACCTACCAAGAGGGTGAAATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTAATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7XRZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.917

100

0.731