Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABCA12_RS14490 Genome accession   NZ_CP068253
Coordinates   3034447..3034773 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain CAM121     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029447..3039773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14470 (ABCA12_2956) - 3029703..3030314 (-) 612 WP_194596771.1 FHA domain-containing protein -
  ABCA12_RS14475 (ABCA12_2957) gspD 3030378..3032633 (-) 2256 WP_194596772.1 type II secretion system secretin GspD -
  ABCA12_RS14480 (ABCA12_2958) - 3032675..3033523 (-) 849 WP_194596773.1 type II secretion system protein N -
  ABCA12_RS14485 (ABCA12_2959) gspN 3033523..3034266 (-) 744 WP_125299600.1 type II secretion system protein N -
  ABCA12_RS14490 (ABCA12_2960) hns 3034447..3034773 (-) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABCA12_RS14495 (ABCA12_2961) - 3035156..3035586 (-) 431 Protein_2836 acyl-CoA thioesterase -
  ABCA12_RS14500 (ABCA12_2963) - 3035595..3036788 (-) 1194 WP_004957381.1 hypothetical protein -
  ABCA12_RS14505 (ABCA12_2964) - 3036795..3037625 (-) 831 WP_194596774.1 hypothetical protein -
  ABCA12_RS14510 (ABCA12_2965) - 3037622..3038398 (-) 777 WP_194596775.1 uroporphyrinogen-III synthase -
  ABCA12_RS14515 (ABCA12_2966) hemC 3038400..3039317 (-) 918 WP_004916978.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=528644 ABCA12_RS14490 WP_004958548.1 3034447..3034773(-) (hns) [Acinetobacter junii strain CAM121]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=528644 ABCA12_RS14490 WP_004958548.1 3034447..3034773(-) (hns) [Acinetobacter junii strain CAM121]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907