Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABCA12_RS13960 Genome accession   NZ_CP068253
Coordinates   2912388..2914613 (+) Length   741 a.a.
NCBI ID   WP_201897832.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2907388..2919613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS13935 (ABCA12_2855) - 2907462..2908301 (+) 840 WP_004916742.1 HlyC/CorC family transporter -
  ABCA12_RS13940 (ABCA12_2856) lnt 2908298..2909857 (+) 1560 WP_201897830.1 apolipoprotein N-acyltransferase -
  ABCA12_RS13945 (ABCA12_2857) - 2909913..2910257 (-) 345 WP_201897831.1 hypothetical protein -
  ABCA12_RS13950 (ABCA12_2858) gspG 2910521..2910958 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  ABCA12_RS13955 (ABCA12_2859) gspF 2910982..2912187 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  ABCA12_RS13960 (ABCA12_2860) priA 2912388..2914613 (+) 2226 WP_201897832.1 primosomal protein N' Machinery gene
  ABCA12_RS13965 (ABCA12_2861) - 2914648..2916468 (+) 1821 WP_201897833.1 cation:proton antiporter -
  ABCA12_RS13970 (ABCA12_2862) - 2916588..2917463 (+) 876 WP_075696840.1 Hsp33 family molecular chaperone HslO -
  ABCA12_RS13975 (ABCA12_2863) - 2917595..2918749 (+) 1155 WP_201897834.1 IS4 family transposase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84084.93 Da        Isoelectric Point: 8.5112

>NTDB_id=528640 ABCA12_RS13960 WP_201897832.1 2912388..2914613(+) (priA) [Acinetobacter junii strain CAM121]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITVLLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILTHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLIECQLEAHDFTPMPIQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQSLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLRAIAANIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=528640 ABCA12_RS13960 WP_201897832.1 2912388..2914613(+) (priA) [Acinetobacter junii strain CAM121]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACTTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACTGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAGCTTAAACCGATTACAGTACTTCTTGAT
GAAGACGCTATTTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGGCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCACGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGT
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAAGCATTGGAAAAAAAGGGACTGATTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTATACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGCGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTTCTAAAGCAAGGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCACGTTTTCATTGCGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATTTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCAGCTACACCAAGTATTGATAGTTATC
ATTTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAAAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTTCTAAACCGTCGAGGTTACGCTCCTGTTTTACTGTGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCGCATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAATCGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTGATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTTACACTAGTCGCTATTCTCGATATCGACTCAGGATTATTAAGCGTAGACCCTAGAGCACCTGAGCGCACAGCACAATT
AATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTGTATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCTGTTGCAAAACAGATGCTGAGTGAGCGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGAGCTATTGCAGCAAATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAGCATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.326

99.73

0.811