Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABCA12_RS13430 Genome accession   NZ_CP068253
Coordinates   2813100..2813987 (-) Length   295 a.a.
NCBI ID   WP_201897799.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2808100..2818987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS13410 (ABCA12_2748) ybeY 2808643..2809128 (+) 486 WP_039047584.1 rRNA maturation RNase YbeY -
  ABCA12_RS16240 - 2809140..2809268 (+) 129 Protein_2629 antibiotic biosynthesis monooxygenase -
  ABCA12_RS13420 - 2810434..2810634 (+) 201 Protein_2631 antibiotic biosynthesis monooxygenase family protein -
  ABCA12_RS13425 (ABCA12_2751) - 2810695..2812845 (-) 2151 WP_201897798.1 TonB-dependent siderophore receptor -
  ABCA12_RS13430 (ABCA12_2752) tonB2 2813100..2813987 (-) 888 WP_201897799.1 energy transducer TonB Machinery gene
  ABCA12_RS13435 (ABCA12_2753) - 2814232..2814909 (+) 678 WP_157938053.1 hypothetical protein -
  ABCA12_RS13440 (ABCA12_2754) - 2815103..2815819 (+) 717 WP_157938054.1 DUF3108 domain-containing protein -
  ABCA12_RS13445 (ABCA12_2755) - 2815908..2816483 (+) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  ABCA12_RS13450 (ABCA12_2756) thyA 2816642..2817484 (+) 843 WP_004916477.1 thymidylate synthase -
  ABCA12_RS13455 (ABCA12_2757) - 2817505..2818014 (+) 510 WP_157937965.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33535.07 Da        Isoelectric Point: 8.3911

>NTDB_id=528639 ABCA12_RS13430 WP_201897799.1 2813100..2813987(-) (tonB2) [Acinetobacter junii strain CAM121]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFTMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=528639 ABCA12_RS13430 WP_201897799.1 2813100..2813987(-) (tonB2) [Acinetobacter junii strain CAM121]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTACTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCAATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCTGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAGGCTGATGCGACTACTGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTAAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAGCTGTACGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGCGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGAGCCCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGATCCCGTGGATGCTGAGTTTGAAG
TGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.61

100

0.766