Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B93_RS15675 Genome accession   NZ_CP082772
Coordinates   3196138..3197565 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli O2:H1 strain HM670     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3191138..3202565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B93_RS15635 (K8B93_15545) yeeW 3191322..3191516 (+) 195 WP_000988601.1 DUF5983 family protein -
  K8B93_RS15640 (K8B93_15550) - 3191562..3191642 (+) 81 Protein_3049 hypothetical protein -
  K8B93_RS24975 (K8B93_15555) - 3191931..3192104 (-) 174 WP_032082634.1 transposase domain-containing protein -
  K8B93_RS24980 (K8B93_15560) - 3192131..3192313 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K8B93_RS15655 (K8B93_15565) tmaR 3192414..3192743 (-) 330 WP_000450409.1 DUF496 family protein -
  K8B93_RS15660 (K8B93_15570) yeeA 3192915..3193973 (-) 1059 WP_001200890.1 FUSC family protein -
  K8B93_RS15665 (K8B93_15575) sbmC 3194171..3194644 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K8B93_RS15670 (K8B93_15580) dacD 3194763..3195929 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B93_RS15675 (K8B93_15585) sbcB 3196138..3197565 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  K8B93_RS15680 (K8B93_15590) plaP 3197639..3198997 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K8B93_RS15685 (K8B93_15595) yoeI 3198987..3199049 (-) 63 WP_010723108.1 membrane protein YoeI -
  K8B93_RS15690 (K8B93_15600) yeeY 3199264..3200193 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K8B93_RS15695 (K8B93_15605) yeeZ 3200239..3201063 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  K8B93_RS15700 (K8B93_15610) yoeB 3201146..3201400 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K8B93_RS15705 (K8B93_15615) yefM 3201397..3201648 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K8B93_RS15710 (K8B93_15620) hisL 3201931..3201981 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=528610 K8B93_RS15675 WP_000980604.1 3196138..3197565(+) (sbcB) [Escherichia coli O2:H1 strain HM670]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528610 K8B93_RS15675 WP_000980604.1 3196138..3197565(+) (sbcB) [Escherichia coli O2:H1 strain HM670]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583