Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   K8B93_RS02270 Genome accession   NZ_CP082772
Coordinates   495338..495814 (-) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli O2:H1 strain HM670     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 490338..500814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B93_RS24905 - 492024..492183 (-) 160 Protein_420 integrase -
  K8B93_RS02240 (K8B93_02235) - 492501..493355 (-) 855 WP_001588930.1 DUF4942 domain-containing protein -
  K8B93_RS02245 (K8B93_02240) - 493440..493637 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  K8B93_RS02250 (K8B93_02245) - 493649..494137 (-) 489 WP_000761667.1 DUF5983 family protein -
  K8B93_RS02255 (K8B93_02250) - 494134..494511 (-) 378 WP_000854747.1 TA system toxin CbtA family protein -
  K8B93_RS02260 (K8B93_02255) - 494601..494969 (-) 369 WP_024182258.1 type IV toxin-antitoxin system YeeU family antitoxin -
  K8B93_RS02265 (K8B93_02260) - 495048..495269 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  K8B93_RS02270 (K8B93_02265) radC 495338..495814 (-) 477 WP_001186756.1 RadC family protein Machinery gene
  K8B93_RS02275 (K8B93_02270) - 495829..496314 (-) 486 WP_021528701.1 antirestriction protein -
  K8B93_RS02280 (K8B93_02275) - 496405..497223 (-) 819 WP_001175140.1 DUF932 domain-containing protein -
  K8B93_RS02285 (K8B93_02280) - 497313..497489 (-) 177 WP_015674954.1 DUF905 family protein -
  K8B93_RS02290 (K8B93_02285) - 497514..498191 (-) 678 WP_001097307.1 hypothetical protein -
  K8B93_RS02295 (K8B93_02290) - 498339..499019 (-) 681 WP_001282927.1 WYL domain-containing protein -
  K8B93_RS02300 (K8B93_02295) - 499222..500106 (-) 885 WP_000010416.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=528582 K8B93_RS02270 WP_001186756.1 495338..495814(-) (radC) [Escherichia coli O2:H1 strain HM670]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=528582 K8B93_RS02270 WP_001186756.1 495338..495814(-) (radC) [Escherichia coli O2:H1 strain HM670]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399