Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B90_RS14265 Genome accession   NZ_CP082771
Coordinates   2906520..2907947 (+) Length   475 a.a.
NCBI ID   WP_000980569.1    Uniprot ID   A0A0H3ELL6
Organism   Escherichia coli LF82     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2901520..2912947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B90_RS14235 (K8B90_14165) pduU 2901898..2902248 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  K8B90_RS14240 (K8B90_14170) - 2902253..2902696 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  K8B90_RS14245 (K8B90_14175) tmaR 2902796..2903125 (-) 330 WP_000450409.1 DUF496 family protein -
  K8B90_RS14250 (K8B90_14180) yeeA 2903297..2904355 (-) 1059 WP_001200890.1 FUSC family protein -
  K8B90_RS14255 (K8B90_14185) sbmC 2904553..2905026 (-) 474 WP_001105406.1 DNA gyrase inhibitor SbmC -
  K8B90_RS14260 (K8B90_14190) dacD 2905145..2906311 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B90_RS14265 (K8B90_14195) sbcB 2906520..2907947 (+) 1428 WP_000980569.1 exodeoxyribonuclease I Machinery gene
  K8B90_RS14270 (K8B90_14200) plaP 2908021..2909379 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K8B90_RS14275 (K8B90_14205) yoeI 2909369..2909431 (-) 63 WP_010723108.1 membrane protein YoeI -
  K8B90_RS14280 (K8B90_14210) yeeY 2909646..2910575 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K8B90_RS14285 (K8B90_14215) yeeZ 2910621..2911445 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  K8B90_RS14290 (K8B90_14220) yoeB 2911528..2911782 (-) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K8B90_RS14295 (K8B90_14225) yefM 2911779..2912030 (-) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K8B90_RS14300 (K8B90_14230) hisL 2912313..2912363 (+) 51 WP_001368802.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4720

>NTDB_id=528525 K8B90_RS14265 WP_000980569.1 2906520..2907947(+) (sbcB) [Escherichia coli LF82]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528525 K8B90_RS14265 WP_000980569.1 2906520..2907947(+) (sbcB) [Escherichia coli LF82]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583