Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JG554_RS04450 Genome accession   NZ_CP068241
Coordinates   961742..962458 (-) Length   238 a.a.
NCBI ID   WP_046208006.1    Uniprot ID   A0AB34AKE2
Organism   Staphylococcus sp. 11-B-312     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 956742..967458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS04430 (JG554_04430) - 956976..958061 (+) 1086 WP_064209766.1 YeeE/YedE family protein -
  JG554_RS04435 (JG554_04435) - 958088..958312 (+) 225 WP_019469551.1 sulfurtransferase TusA family protein -
  JG554_RS04440 (JG554_04440) - 959126..960607 (+) 1482 WP_070039261.1 sucrose-6-phosphate hydrolase -
  JG554_RS04445 (JG554_04445) - 960608..961573 (+) 966 WP_070039265.1 carbohydrate kinase -
  JG554_RS04450 (JG554_04450) agrA 961742..962458 (-) 717 WP_046208006.1 LytTR family DNA-binding domain-containing protein Regulator
  JG554_RS04455 (JG554_04455) - 962471..963765 (-) 1295 Protein_879 GHKL domain-containing protein -
  JG554_RS04460 (JG554_04460) - 963796..963933 (-) 138 WP_046208004.1 cyclic lactone autoinducer peptide -
  JG554_RS04465 (JG554_04465) - 963936..964505 (-) 570 WP_046208003.1 accessory gene regulator AgrB -
  JG554_RS04470 (JG554_04470) - 965244..966029 (-) 786 WP_064209760.1 carbon-nitrogen family hydrolase -
  JG554_RS04475 (JG554_04475) - 966257..966886 (-) 630 WP_046208001.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27968.78 Da        Isoelectric Point: 4.8826

>NTDB_id=528478 JG554_RS04450 WP_046208006.1 961742..962458(-) (agrA) [Staphylococcus sp. 11-B-312]
MKIFICEDDVRQRENIVSIINNYIMIEEKPMEIEVATSDPYEVLERAKELKDIGCYFLDIQLEADINGIKLASEIRKYDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSETRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFESSSNSHRLIAHLDNRQIEFYGNLKEIDNLDERFFRCHNSFVVNRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=528478 JG554_RS04450 WP_046208006.1 961742..962458(-) (agrA) [Staphylococcus sp. 11-B-312]
ATGAAAATATTCATTTGTGAAGATGATGTAAGACAACGTGAAAATATAGTTTCTATTATCAATAATTACATCATGATAGA
AGAAAAACCAATGGAAATTGAAGTAGCTACGTCAGATCCTTATGAGGTATTGGAACGTGCAAAGGAACTTAAAGATATTG
GTTGTTATTTTCTTGATATACAATTAGAGGCCGATATTAACGGTATTAAATTAGCAAGTGAGATTAGAAAATATGATCCT
GTGAGCAATATCATATTTGTCACAAGTCATAGTGAGCTTACTTATTTAACCTTTGTATATAAAGTTGCTGCTATGGATTT
CATCTTCAAAGATGATCCTGACGAATTAAAATCCAGAGTGATTGATTGCCTCGAAACTTCAGAAACTCGATTGAAATTAC
TTTCAAAAGAAAGCACGGTTGAAACAATCGAACTTAAACGCGGCAGCAATTCTATTTATGTACAATACGATGATGTCATG
TTCTTTGAATCATCTTCGAATTCGCATCGTTTGATTGCTCATTTGGACAATAGGCAAATTGAATTTTATGGTAATTTAAA
AGAAATTGATAATTTAGACGAGCGTTTTTTCAGATGTCATAATAGTTTTGTTGTCAATAGACACAATATTGAATCCATTG
ATTCTAAGTCACGTATTGTTTATTTCAAAAATAATGAACACTGCTATGCTTCTGTACGTAATGTTAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.034

100

0.84