Detailed information NTG0528472

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: JG554_RS00245
• Genome accession: NZ_CP068241
• Coordinates: 48397..50022 (-)
• Length: 541 a.a.
• NCBI ID: WP_046207797.1
• Uniprot ID: -
• Organism: Staphylococcus sp. 11-B-312
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	48397..51393	48397..50022	within	0

Gene organization within MGE regions

Location: 48397..51393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JG554_RS00245 (JG554_00245)	ccrB	48397..50022 (-)	1626	WP_046207797.1	recombinase family protein	Machinery gene
JG554_RS00250 (JG554_00250)	ccrA	50056..51393 (-)	1338	WP_046207798.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62403.40 Da
• Isoelectric Point: 9.7147

>NTDB_id=528472 JG554_RS00245 WP_046207797.1 48397..50022(-) (ccrB) [Staphylococcus sp. 11-B-312]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCKFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLTQVVERVNQDSQIGMDALNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAVLLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1626 bp

>NTDB_id=528472 JG554_RS00245 WP_046207797.1 48397..50022(-) (ccrB) [Staphylococcus sp. 11-B-312]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTATCCACAGAGAGACAAGTAGAGGGTTATAGCATTGA
GGGACAAATTACACAAATAGAGCAATATTGCAAATTTAACGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGTCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGTAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAACATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCACAAAGGCTATGTGACTAAAAAAG
GCAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTTGCGAAGTAC
AAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTATTAG
TCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCAATC
TATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGATGGT
ACTAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGTTAG
AGCTGATGTGATTGAAAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTTCTCACACAAGTTGTCG
AACGTGTTAATCAAGATAGTCAAATTGGTATGGATGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGATGAA
ATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGATAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATCTT
ACGATACGAAACAAATCGCTGTCCTATTACAACGAATCTTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACACTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (11-154)

• Ogr/Delta-like zinc finger (Ogr_Delta) (300-355)

• Recombinase (Recombinase) (179-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	80.074	100	0.802