Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K7X31_RS08595 Genome accession   NZ_CP082357
Coordinates   1858206..1859633 (-) Length   475 a.a.
NCBI ID   WP_223025055.1    Uniprot ID   -
Organism   Escherichia coli strain VCSW7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1853206..1864633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X31_RS08565 (K7X31_08560) yeeZ 1853264..1854088 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K7X31_RS08570 (K7X31_08565) yeeY 1854134..1855063 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K7X31_RS08575 (K7X31_08570) yoeI 1855278..1855340 (+) 63 WP_010723108.1 membrane protein YoeI -
  K7X31_RS08580 (K7X31_08575) plaP 1855330..1856688 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K7X31_RS08585 (K7X31_08580) tsuA 1856864..1857922 (+) 1059 WP_191652093.1 thiosulfate utilization transporter TsuA/YeeE -
  K7X31_RS08590 (K7X31_08585) tsuB 1857936..1858163 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K7X31_RS08595 (K7X31_08590) sbcB 1858206..1859633 (-) 1428 WP_223025055.1 exodeoxyribonuclease I Machinery gene
  K7X31_RS08600 (K7X31_08595) dacD 1859842..1861008 (+) 1167 WP_223025056.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K7X31_RS08605 (K7X31_08600) sbmC 1861127..1861600 (+) 474 WP_001105397.1 DNA gyrase inhibitor SbmC -
  K7X31_RS08610 (K7X31_08605) yeeA 1861798..1862856 (+) 1059 WP_001200891.1 FUSC family protein -
  K7X31_RS08615 (K7X31_08610) tmaR 1863028..1863357 (+) 330 WP_000450409.1 DUF496 family protein -
  K7X31_RS08620 (K7X31_08615) - 1863458..1863901 (-) 444 WP_001189434.1 EutP/PduV family microcompartment system protein -
  K7X31_RS08625 (K7X31_08620) pduU 1863906..1864256 (-) 351 WP_000211395.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.80 Da        Isoelectric Point: 5.3521

>NTDB_id=528435 K7X31_RS08595 WP_223025055.1 1858206..1859633(-) (sbcB) [Escherichia coli strain VCSW7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDEG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528435 K7X31_RS08595 WP_223025055.1 1858206..1859633(-) (sbcB) [Escherichia coli strain VCSW7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCAAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAGGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGAAGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAACAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579