Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K7X33_RS22405 Genome accession   NZ_CP082355
Coordinates   4708618..4709610 (-) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli strain VCSW5     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4703618..4714610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X33_RS22395 (K7X33_22395) yieP 4706510..4707202 (+) 693 WP_001131162.1 FadR/GntR family transcriptional regulator -
  K7X33_RS22400 (K7X33_22400) mdtD 4707225..4708652 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  K7X33_RS22405 (K7X33_22405) cytR 4708618..4709610 (-) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  K7X33_RS22410 (K7X33_22410) rbsK 4709614..4710543 (-) 930 WP_001361088.1 ribokinase -
  K7X33_RS22415 (K7X33_22415) rbsB 4710669..4711559 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  K7X33_RS22420 (K7X33_22420) rbsC 4711584..4712549 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  K7X33_RS22425 (K7X33_22425) rbsA 4712554..4714059 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  K7X33_RS22430 (K7X33_22430) rbsD 4714067..4714486 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=528398 K7X33_RS22405 WP_000224462.1 4708618..4709610(-) (cytR) [Escherichia coli strain VCSW5]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=528398 K7X33_RS22405 WP_000224462.1 4708618..4709610(-) (cytR) [Escherichia coli strain VCSW5]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATACAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAAGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTAGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364