Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JJQ56_RS17050 Genome accession   NZ_CP068237
Coordinates   3495264..3495860 (-) Length   198 a.a.
NCBI ID   WP_153679286.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain YDKL-002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3490264..3500860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ56_RS17035 helD 3490475..3492529 (-) 2055 WP_202023672.1 DNA helicase IV -
  JJQ56_RS17040 - 3492654..3493100 (+) 447 WP_004201437.1 YccF domain-containing protein -
  JJQ56_RS17045 yccS 3493118..3495253 (+) 2136 WP_153679285.1 YccS family putative transporter -
  JJQ56_RS17050 sxy/tfoX 3495264..3495860 (-) 597 WP_153679286.1 TfoX/Sxy family DNA transformation protein Regulator
  JJQ56_RS17055 sulA 3496220..3496729 (+) 510 WP_202023673.1 SOS-induced cell division inhibitor SulA -
  JJQ56_RS17060 ompA 3497082..3498152 (+) 1071 WP_153679287.1 porin OmpA -
  JJQ56_RS17065 matP 3498340..3498792 (-) 453 WP_202023674.1 macrodomain Ter protein MatP -
  JJQ56_RS17070 - 3498978..3500735 (+) 1758 WP_202023675.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22654.35 Da        Isoelectric Point: 10.2333

>NTDB_id=528393 JJQ56_RS17050 WP_153679286.1 3495264..3495860(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain YDKL-002]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=528393 JJQ56_RS17050 WP_153679286.1 3495264..3495860(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain YDKL-002]
ATGAGAAAACTAGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTGAAGGCCTGCG
AGCAGAGCGCCGCCTATCGGGTTGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTGAAG
TATTATCAAATCGATGATGCCTTGTGGCGCGATGAAAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCTCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCTCTGGAGGGGGCGATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.256

98.485

0.495