Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JJN11_RS08330 Genome accession   NZ_CP068234
Coordinates   1755320..1755949 (+) Length   209 a.a.
NCBI ID   WP_156654226.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain YZ30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750320..1760949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN11_RS08310 (JJN11_08285) - 1750715..1752475 (-) 1761 WP_156654224.1 Lon protease family protein -
  JJN11_RS08315 (JJN11_08290) matP 1752662..1753117 (+) 456 WP_103178956.1 macrodomain Ter protein MatP -
  JJN11_RS08320 (JJN11_08295) ompA 1753183..1754238 (-) 1056 WP_103181059.1 porin OmpA -
  JJN11_RS08325 (JJN11_08300) sulA 1754593..1755102 (-) 510 WP_156654225.1 SOS-induced cell division inhibitor SulA -
  JJN11_RS08330 (JJN11_08305) sxy/tfoX 1755320..1755949 (+) 630 WP_156654226.1 TfoX/Sxy family DNA transformation protein Regulator
  JJN11_RS08335 (JJN11_08310) yccS 1755930..1758065 (-) 2136 WP_103178959.1 YccS family putative transporter -
  JJN11_RS08340 (JJN11_08315) - 1758084..1758530 (-) 447 WP_103178960.1 YccF domain-containing protein -
  JJN11_RS08345 (JJN11_08320) helD 1758654..1760708 (+) 2055 WP_103178961.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24138.85 Da        Isoelectric Point: 6.2681

>NTDB_id=528361 JJN11_RS08330 WP_156654226.1 1755320..1755949(+) (sxy/tfoX) [Leclercia adecarboxylata strain YZ30]
MKKLSYERIYQSAEYLSPLGEVQYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASSFLSLVKRGRPVLLN
YFRVDEGLWQDRETLLQLSSFALEAARRERCERYKRERLKDLPNLTFQLEILLYEAGITNEEALRELGAEQCWLKIRVLN
KHLSYKVLFALEGAITGLHVAALPEVRRQELVEWYKKLPVETPVTPAVD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=528361 JJN11_RS08330 WP_156654226.1 1755320..1755949(+) (sxy/tfoX) [Leclercia adecarboxylata strain YZ30]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTGGGCGAAGTTCAGTATCGTGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTGTG
AGGAGAGTGCACCCTACTGCGTAAAGCATGCCTCGTCTTTCCTGTCGCTGGTGAAGCGGGGGCGGCCGGTGTTGTTAAAC
TATTTTCGCGTCGATGAAGGTCTCTGGCAGGATCGCGAAACGCTTCTGCAGCTCTCGTCGTTTGCGCTGGAGGCGGCGCG
GCGGGAGCGCTGCGAACGCTACAAGCGCGAGAGGCTGAAAGATTTACCCAATCTCACCTTTCAGCTGGAGATCCTGCTCT
ATGAAGCGGGCATCACCAATGAAGAGGCATTACGTGAGCTGGGAGCAGAACAGTGCTGGCTGAAGATCAGAGTGCTGAAC
AAGCACCTCAGTTACAAGGTGCTGTTTGCGCTGGAAGGGGCGATCACCGGGCTCCACGTCGCTGCGCTCCCGGAAGTCAG
ACGCCAGGAGCTGGTGGAGTGGTACAAAAAGCTGCCGGTTGAGACGCCCGTCACTCCGGCAGTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.596

94.737

0.565