Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K7X33_RS08900 Genome accession   NZ_CP082355
Coordinates   1888869..1890296 (-) Length   475 a.a.
NCBI ID   WP_000980625.1    Uniprot ID   -
Organism   Escherichia coli strain VCSW5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1883869..1895296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X33_RS08870 (K7X33_08870) yeeZ 1883924..1884748 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K7X33_RS08875 (K7X33_08875) yeeY 1884794..1885723 (+) 930 WP_000803367.1 LysR substrate-binding domain-containing protein -
  K7X33_RS08880 (K7X33_08880) yoeI 1885938..1886000 (+) 63 WP_097415165.1 membrane protein YoeI -
  K7X33_RS08885 (K7X33_08885) plaP 1885990..1887348 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K7X33_RS08890 (K7X33_08890) tsuA 1887527..1888585 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  K7X33_RS08895 (K7X33_08895) tsuB 1888599..1888826 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K7X33_RS08900 (K7X33_08900) sbcB 1888869..1890296 (-) 1428 WP_000980625.1 exodeoxyribonuclease I Machinery gene
  K7X33_RS08905 (K7X33_08905) dacD 1890505..1891671 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K7X33_RS08910 (K7X33_08910) sbmC 1891790..1892263 (+) 474 WP_223040245.1 DNA gyrase inhibitor SbmC -
  K7X33_RS08915 (K7X33_08915) yeeA 1892461..1893519 (+) 1059 WP_001200891.1 FUSC family protein -
  K7X33_RS08920 (K7X33_08920) tmaR 1893691..1894020 (+) 330 WP_000450409.1 DUF496 family protein -
  K7X33_RS08925 (K7X33_08925) - 1894121..1894564 (-) 444 WP_001189434.1 EutP/PduV family microcompartment system protein -
  K7X33_RS08930 (K7X33_08930) pduU 1894569..1894919 (-) 351 WP_223040246.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.73 Da        Isoelectric Point: 5.4700

>NTDB_id=528355 K7X33_RS08900 WP_000980625.1 1888869..1890296(-) (sbcB) [Escherichia coli strain VCSW5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528355 K7X33_RS08900 WP_000980625.1 1888869..1890296(-) (sbcB) [Escherichia coli strain VCSW5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCACTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583