Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JJJ22_RS06650 Genome accession   NZ_CP068232
Coordinates   1351811..1353250 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae isolate Aero19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346811..1358250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJJ22_RS06620 (JJJ22_06620) mlaF 1347389..1348189 (-) 801 WP_069785529.1 phospholipid ABC transporter ATP-binding protein MlaF -
  JJJ22_RS06625 (JJJ22_06625) - 1348396..1349391 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  JJJ22_RS06630 (JJJ22_06630) kdsC 1349391..1349945 (+) 555 WP_200164290.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JJJ22_RS06635 (JJJ22_06635) lptC 1349942..1350502 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  JJJ22_RS06640 (JJJ22_06640) lptA 1350489..1351007 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  JJJ22_RS06645 (JJJ22_06645) lptB 1351020..1351745 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  JJJ22_RS06650 (JJJ22_06650) rpoN/rpoN1 1351811..1353250 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  JJJ22_RS06655 (JJJ22_06655) hpf 1353271..1353558 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  JJJ22_RS06660 (JJJ22_06660) ptsN 1353561..1354007 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JJJ22_RS06665 (JJJ22_06665) rapZ 1354048..1354914 (+) 867 WP_010675869.1 RNase adapter RapZ -
  JJJ22_RS06670 (JJJ22_06670) npr 1354935..1355207 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  JJJ22_RS06675 (JJJ22_06675) - 1355223..1357127 (-) 1905 WP_143238150.1 BglG family transcription antiterminator -
  JJJ22_RS06680 (JJJ22_06680) dagF 1357233..1357973 (-) 741 WP_043154589.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=528338 JJJ22_RS06650 WP_039040474.1 1351811..1353250(+) (rpoN/rpoN1) [Aeromonas caviae isolate Aero19]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=528338 JJJ22_RS06650 WP_039040474.1 1351811..1353250(+) (rpoN/rpoN1) [Aeromonas caviae isolate Aero19]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCAGACCTGCCCT
GGCTCGATGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCTAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482