Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K7H97_RS09030 Genome accession   NZ_CP082349
Coordinates   1861533..1862960 (-) Length   475 a.a.
NCBI ID   WP_073520472.1    Uniprot ID   -
Organism   Escherichia coli strain AL.H8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856533..1867960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H97_RS08995 (K7H97_08995) hisL 1857117..1857167 (-) 51 WP_001364200.1 his operon leader peptide -
  K7H97_RS09000 (K7H97_09000) yefM 1857450..1857701 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K7H97_RS09005 (K7H97_09005) yoeB 1857698..1857952 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K7H97_RS09010 (K7H97_09010) yeeZ 1858035..1858859 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  K7H97_RS09015 (K7H97_09015) yeeY 1858905..1859834 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K7H97_RS09020 (K7H97_09020) yoeI 1860049..1860111 (+) 63 WP_010723108.1 membrane protein YoeI -
  K7H97_RS09025 (K7H97_09025) plaP 1860101..1861459 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K7H97_RS09030 (K7H97_09030) sbcB 1861533..1862960 (-) 1428 WP_073520472.1 exodeoxyribonuclease I Machinery gene
  K7H97_RS09035 (K7H97_09035) dacD 1863169..1864335 (+) 1167 WP_047661092.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K7H97_RS09040 (K7H97_09040) sbmC 1864454..1864927 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  K7H97_RS09045 (K7H97_09045) yeeA 1865125..1866183 (+) 1059 WP_001200891.1 FUSC family protein -
  K7H97_RS09050 (K7H97_09050) tmaR 1866355..1866684 (+) 330 WP_000450409.1 DUF496 family protein -
  K7H97_RS09055 (K7H97_09055) - 1866785..1867228 (-) 444 WP_001369832.1 EutP/PduV family microcompartment system protein -
  K7H97_RS09060 (K7H97_09060) pduU 1867233..1867583 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54522.86 Da        Isoelectric Point: 5.6070

>NTDB_id=528274 K7H97_RS09030 WP_073520472.1 1861533..1862960(-) (sbcB) [Escherichia coli strain AL.H8]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDYG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528274 K7H97_RS09030 WP_073520472.1 1861533..1862960(-) (sbcB) [Escherichia coli strain AL.H8]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATTACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579