Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I98_RS23935 Genome accession   NZ_CP068224
Coordinates   5705202..5706587 (-) Length   461 a.a.
NCBI ID   WP_120335682.1    Uniprot ID   A0A420FHL1
Organism   Sphingobacterium multivorum strain FDAARGOS_1141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5700202..5711587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I98_RS23920 (I6I98_23920) nagB 5701074..5703002 (-) 1929 WP_201666900.1 glucosamine-6-phosphate deaminase -
  I6I98_RS23925 (I6I98_23925) - 5703144..5704292 (-) 1149 WP_201666901.1 methionine aminotransferase -
  I6I98_RS23930 (I6I98_23930) - 5704365..5705048 (+) 684 WP_201666902.1 peroxiredoxin family protein -
  I6I98_RS23935 (I6I98_23935) radA 5705202..5706587 (-) 1386 WP_120335682.1 DNA repair protein RadA Machinery gene
  I6I98_RS23940 (I6I98_23940) - 5706606..5707766 (-) 1161 WP_201666903.1 dipeptidase -
  I6I98_RS23945 (I6I98_23945) - 5707763..5709487 (-) 1725 WP_201666904.1 serine hydrolase domain-containing protein -
  I6I98_RS23950 (I6I98_23950) xseA 5709684..5710970 (+) 1287 WP_201666905.1 exodeoxyribonuclease VII large subunit -
  I6I98_RS23955 (I6I98_23955) xseB 5711013..5711234 (+) 222 WP_075990493.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50538.91 Da        Isoelectric Point: 7.0182

>NTDB_id=528210 I6I98_RS23935 WP_120335682.1 5705202..5706587(-) (radA) [Sphingobacterium multivorum strain FDAARGOS_1141]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKASSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGVRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=528210 I6I98_RS23935 WP_120335682.1 5705202..5706587(-) (radA) [Sphingobacterium multivorum strain FDAARGOS_1141]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTACGAATCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAGGCGAGTTCAAAAGTGCCCGAATGGCGTAGTTCTACCACAG
GCGGAAGCACGAAAAGAGCGAATAAAGCTGCCATCATCCACGAAATCGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTTAACCGGGTTCTTGGTGGCGGTATCGTTCCGGGGTCATTGGTACTTATCGGAGGCGAACCCGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCTTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAGGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCTACTCAA
AATATTTTCAAGCAGATCGAGACGGTACAACCTAATGTCATTGTAATAGATTCTATACAGACTTTACATTCCGCACAAAT
TGAATCGGCGCCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAGGAAACCAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGACGGATCTATTGCAGGCCCTAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGAATTTTACGGGCCGTAAAGAATCGTTTTGGATCTGCTTCAGAACT
GGGTATTTATGAAATGCAGGGGTCGGGATTGAGGGAAGTGTCAAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAGTGCGGCCTATGATGATTGAAGTACAGGCACTGGTGAGTAAC
TCGGCGTTTGGAAATGCACAGCGCTCTTCTACAGGTTACGATACGAAGCGATTAAATATGCTGCTGGCTGTTTTGGAGAA
ACGCTTTGGCTTCAGGTTAAGTGCACAGGATGTATTTTTGAATATTGCAGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTAGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATCGCGATTCGATCCAATCTGACTTTTGCCGGTGAGGTT
GGTTTATCGGGTGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ATATCTTCAGTGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(75-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420FHL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.95

96.095

0.518