Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I99_RS26380 Genome accession   NZ_CP068223
Coordinates   6221566..6222951 (+) Length   461 a.a.
NCBI ID   WP_201669844.1    Uniprot ID   -
Organism   Sphingobacterium multivorum strain FDAARGOS_1142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6216566..6227951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I99_RS26360 (I6I99_26360) xseB 6216918..6217139 (-) 222 WP_075990493.1 exodeoxyribonuclease VII small subunit -
  I6I99_RS26365 (I6I99_26365) xseA 6217182..6218468 (-) 1287 WP_201669841.1 exodeoxyribonuclease VII large subunit -
  I6I99_RS26370 (I6I99_26370) - 6218666..6220390 (+) 1725 WP_201669842.1 serine hydrolase domain-containing protein -
  I6I99_RS26375 (I6I99_26375) - 6220387..6221547 (+) 1161 WP_201669843.1 dipeptidase -
  I6I99_RS26380 (I6I99_26380) radA 6221566..6222951 (+) 1386 WP_201669844.1 DNA repair protein RadA Machinery gene
  I6I99_RS26385 (I6I99_26385) - 6223105..6223788 (-) 684 WP_159332607.1 peroxiredoxin family protein -
  I6I99_RS26390 (I6I99_26390) - 6223861..6225009 (+) 1149 WP_201666901.1 methionine aminotransferase -
  I6I99_RS26395 (I6I99_26395) nagB 6225151..6227079 (+) 1929 WP_201669845.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50554.91 Da        Isoelectric Point: 7.0182

>NTDB_id=528203 I6I99_RS26380 WP_201669844.1 6221566..6222951(+) (radA) [Sphingobacterium multivorum strain FDAARGOS_1142]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKASSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGVRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=528203 I6I99_RS26380 WP_201669844.1 6221566..6222951(+) (radA) [Sphingobacterium multivorum strain FDAARGOS_1142]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAATTGTGGCTACGAATCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAAGAAGTCGTCGAAAAGGCGAGTTCAAAAGTGCCCGAATGGCGTAGTTCTACCACAG
GCGGAAGCACGAAAAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTTAACCGGGTTCTTGGTGGTGGTATCGTTCCGGGGTCATTGGTACTTATCGGAGGCGAGCCCGGTATTGG
GAAGTCTACGTTGATGTTACAACTCGCTTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCTACTCAA
AATATTTTCAAGCAGATCGAGACGGTACAACCTAATGTCATTGTAATAGATTCTATACAGACTTTACATTCCTCTCAAAT
TGAATCGGCGCCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAGGAAACCAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGACGGATCTATTGCAGGCCCTAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGAATTTTACGGGCCGTAAAGAATCGTTTTGGATCTGCTTCAGAACT
GGGTATTTATGAAATGCAGGGGTCGGGATTGAGGGAAGTGTCAAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAGTGCGGCCTATGATGATTGAAGTACAGGCACTGGTGAGTAAC
TCGGCGTTTGGAAATGCACAGCGCTCTTCTACAGGTTACGATACGAAGCGATTAAATATGCTGCTGGCTGTTTTGGAGAA
ACGCTTTGGCTTCAGGTTAAGTGCACAGGATGTATTTTTGAATATTGCAGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTAGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATTGCGATTCGATCCAATCTGACTTTTGCAGGTGAGGTT
GGTTTATCGGGTGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ATATCTTCAGCGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

54.176

96.095

0.521