Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6983_RS08155 Genome accession   NZ_CP082327
Coordinates   1727881..1729308 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain B2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1722881..1734308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6983_RS08125 (K6983_08115) yeeZ 1722936..1723760 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K6983_RS08130 (K6983_08120) yeeY 1723806..1724735 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  K6983_RS08135 (K6983_08125) yoeI 1724950..1725012 (+) 63 WP_010723108.1 membrane protein YoeI -
  K6983_RS08140 (K6983_08130) plaP 1725002..1726360 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K6983_RS08145 (K6983_08135) tsuA 1726539..1727597 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  K6983_RS08150 (K6983_08140) tsuB 1727611..1727838 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K6983_RS08155 (K6983_08145) sbcB 1727881..1729308 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  K6983_RS08160 (K6983_08150) dacD 1729497..1730663 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6983_RS08165 (K6983_08155) sbmC 1730782..1731255 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  K6983_RS08170 (K6983_08160) yeeA 1731454..1732512 (+) 1059 WP_001200891.1 FUSC family protein -
  K6983_RS08175 (K6983_08165) tmaR 1732684..1733013 (+) 330 WP_000450409.1 DUF496 family protein -
  K6983_RS08180 (K6983_08170) - 1733114..1733296 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K6983_RS08185 (K6983_08175) - 1733359..1733496 (+) 138 Protein_1603 transposase domain-containing protein -
  K6983_RS08190 (K6983_08180) - 1733785..1733877 (-) 93 Protein_1604 DUF957 domain-containing protein -
  K6983_RS08195 (K6983_08185) yeeW 1733911..1734105 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=528195 K6983_RS08155 WP_000980610.1 1727881..1729308(-) (sbcB) [Escherichia coli strain B2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=528195 K6983_RS08155 WP_000980610.1 1727881..1729308(-) (sbcB) [Escherichia coli strain B2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581