Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   I6J08_RS06810 Genome accession   NZ_CP068219
Coordinates   1345938..1346906 (-) Length   322 a.a.
NCBI ID   WP_017637112.1    Uniprot ID   A0A653Z3V4
Organism   Staphylococcus pasteuri strain FDAARGOS_1151     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1340938..1351906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J08_RS06780 (I6J08_06775) - 1340982..1341509 (+) 528 WP_017637106.1 GrpB family protein -
  I6J08_RS06785 (I6J08_06780) murB 1341743..1342669 (+) 927 WP_026083472.1 UDP-N-acetylmuramate dehydrogenase -
  I6J08_RS06790 (I6J08_06785) - 1342693..1343007 (+) 315 WP_017637108.1 CHY zinc finger protein -
  I6J08_RS06795 (I6J08_06790) - 1343070..1344104 (-) 1035 WP_017637109.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  I6J08_RS06800 (I6J08_06795) - 1344219..1344992 (-) 774 WP_017637110.1 ABC transporter ATP-binding protein -
  I6J08_RS06805 (I6J08_06800) - 1344989..1345948 (-) 960 WP_017637111.1 iron chelate uptake ABC transporter family permease subunit -
  I6J08_RS06810 (I6J08_06805) ceuB 1345938..1346906 (-) 969 WP_017637112.1 ABC transporter permease Machinery gene
  I6J08_RS06815 (I6J08_06810) nrdF 1347116..1348090 (-) 975 WP_002450939.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  I6J08_RS06820 (I6J08_06815) nrdE 1348481..1350586 (-) 2106 WP_017637113.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  I6J08_RS06825 (I6J08_06820) nrdI 1350549..1350947 (-) 399 WP_026083473.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35426.76 Da        Isoelectric Point: 10.1815

>NTDB_id=528185 I6J08_RS06810 WP_017637112.1 1345938..1346906(-) (ceuB) [Staphylococcus pasteuri strain FDAARGOS_1151]
MKFLLKGYVLLIFLVAFTVLSLFVGVSQISITDIFHLNSDQLNIILSSRIPRTVSILISGSTLGIAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILLSLIFFPKGHILIKLIFAVICSVVGTYFFVKLVQLIKVKDVIFIPLLGIMLGGIVSSFTTFIALR
TNAVQSIGNWLNGNFAIITSGRYEVLYLSIPFLIITYIFANHFTIAGMGKDFSHNLGVNYEKIINIALFITATITALVVV
TVGTLPFLGLIVPNIISIYRGDHLKHALPHTMMLGAVFVLFSDIIGRLIVYPYEINIGLTIGVFGTIIFLILLMKGRGNY
AN

Nucleotide


Download         Length: 969 bp        

>NTDB_id=528185 I6J08_RS06810 WP_017637112.1 1345938..1346906(-) (ceuB) [Staphylococcus pasteuri strain FDAARGOS_1151]
ATGAAGTTTTTACTTAAGGGATATGTTTTACTCATCTTTCTCGTTGCGTTTACGGTTCTTTCTTTATTTGTTGGTGTTAG
CCAAATATCGATTACTGATATTTTCCATCTTAATAGCGACCAATTAAATATTATTTTATCGAGTCGTATTCCTCGAACAG
TTAGTATTCTCATATCAGGTAGTACATTGGGTATCGCTGGTTTAATTATGCAACAAATGATGCAAAATAAATTTGTAAGT
CCAACGACAGCAGGTACGATGGAATGGGCAAAATTAGGTATTTTATTATCTTTAATTTTCTTTCCTAAAGGACATATACT
TATCAAATTAATTTTTGCTGTTATATGCAGTGTAGTTGGAACTTATTTCTTTGTTAAATTAGTTCAACTTATTAAGGTGA
AAGATGTCATCTTTATTCCGTTGTTAGGTATTATGCTTGGTGGCATAGTCTCTAGTTTTACGACATTTATTGCGTTACGT
ACAAATGCAGTTCAAAGCATAGGTAATTGGTTGAATGGTAATTTTGCCATTATTACTAGTGGTCGTTACGAAGTATTATA
TTTAAGTATTCCGTTTTTAATAATTACATATATATTTGCGAACCATTTTACGATTGCGGGTATGGGCAAAGACTTCAGCC
ATAACTTAGGAGTTAACTATGAAAAAATAATTAACATCGCTTTATTTATAACTGCAACAATTACTGCGCTTGTTGTTGTC
ACTGTTGGTACATTACCATTTCTAGGGTTAATTGTTCCTAATATCATTTCAATTTATAGAGGAGACCATTTAAAACATGC
TTTACCTCATACAATGATGTTAGGTGCGGTCTTTGTGCTGTTTTCAGACATTATAGGTCGACTAATCGTGTACCCATACG
AAATTAACATCGGTTTAACTATAGGTGTGTTTGGAACTATTATATTCCTTATCTTATTGATGAAAGGTAGGGGTAATTAT
GCTAACTAA

Domains


Predicted by InterproScan.

(14-315)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A653Z3V4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.438

99.379

0.481