Detailed information NTG0528182

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6983_RS04765
• Genome accession: NZ_CP082327
• Coordinates: 990037..991029 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 985037..996029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6983_RS04735 (K6983_04730)	ispD	985098..985808 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6983_RS04740 (K6983_04735)	ispF	985808..986287 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6983_RS04745 (K6983_04740)	truD	986284..987333 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
K6983_RS04750 (K6983_04745)	surE	987314..988075 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6983_RS04755 (K6983_04750)	pcm	988069..988695 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K6983_RS04760 (K6983_04755)	nlpD	988880..989974 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
K6983_RS04765 (K6983_04760)	rpoS	990037..991029 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6983_RS04770 (K6983_04765)	ygbN	991123..992487 (-)	1365	WP_000104441.1	GntP family transporter	-
K6983_RS04775 (K6983_04770)	ygbM	992576..993352 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
K6983_RS04780 (K6983_04775)	ygbL	993357..993995 (-)	639	WP_001278994.1	aldolase	-
K6983_RS04785 (K6983_04780)	otnK	993992..995254 (-)	1263	WP_063080965.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=528182 K6983_RS04765 WP_000081550.1 990037..991029(+) (rpoS) [Escherichia coli strain B2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=528182 K6983_RS04765 WP_000081550.1 990037..991029(+) (rpoS) [Escherichia coli strain B2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715