Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J09_RS09830 Genome accession   NZ_CP068216
Coordinates   2059241..2060209 (+) Length   322 a.a.
NCBI ID   WP_017637112.1    Uniprot ID   A0A653Z3V4
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054241..2065209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS09815 (I6J09_09810) nrdI 2055200..2055598 (+) 399 WP_026083473.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  I6J09_RS09820 (I6J09_09815) nrdE 2055561..2057666 (+) 2106 WP_017637113.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  I6J09_RS09825 (I6J09_09820) nrdF 2058057..2059031 (+) 975 WP_002450939.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  I6J09_RS09830 (I6J09_09825) ceuB 2059241..2060209 (+) 969 WP_017637112.1 ABC transporter permease Machinery gene
  I6J09_RS09835 (I6J09_09830) - 2060199..2061158 (+) 960 WP_017637111.1 iron chelate uptake ABC transporter family permease subunit -
  I6J09_RS09840 (I6J09_09835) - 2061155..2061928 (+) 774 WP_046466457.1 ABC transporter ATP-binding protein -
  I6J09_RS09845 (I6J09_09840) - 2062043..2063077 (+) 1035 WP_119622726.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  I6J09_RS09850 (I6J09_09845) - 2063140..2063454 (-) 315 Protein_1904 CHY zinc finger protein -
  I6J09_RS09855 (I6J09_09850) murB 2063478..2064404 (-) 927 WP_026083472.1 UDP-N-acetylmuramate dehydrogenase -
  I6J09_RS09860 (I6J09_09855) - 2064638..2065165 (-) 528 WP_119622725.1 GrpB family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.76 Da        Isoelectric Point: 10.1815

>NTDB_id=528156 I6J09_RS09830 WP_017637112.1 2059241..2060209(+) (ceuB) [Staphylococcus pasteuri strain FDAARGOS_1152]
MKFLLKGYVLLIFLVAFTVLSLFVGVSQISITDIFHLNSDQLNIILSSRIPRTVSILISGSTLGIAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILLSLIFFPKGHILIKLIFAVICSVVGTYFFVKLVQLIKVKDVIFIPLLGIMLGGIVSSFTTFIALR
TNAVQSIGNWLNGNFAIITSGRYEVLYLSIPFLIITYIFANHFTIAGMGKDFSHNLGVNYEKIINIALFITATITALVVV
TVGTLPFLGLIVPNIISIYRGDHLKHALPHTMMLGAVFVLFSDIIGRLIVYPYEINIGLTIGVFGTIIFLILLMKGRGNY
AN

Nucleotide


Download         Length: 969 bp        

>NTDB_id=528156 I6J09_RS09830 WP_017637112.1 2059241..2060209(+) (ceuB) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGAAGTTTTTACTTAAGGGATATGTTTTACTCATCTTTCTCGTTGCGTTTACGGTTCTTTCTTTATTTGTTGGTGTTAG
CCAAATATCGATTACTGATATTTTCCATCTTAATAGCGACCAATTAAATATTATTTTATCGAGTCGTATTCCTCGAACAG
TTAGTATTCTCATATCAGGTAGTACATTGGGTATCGCTGGTTTAATTATGCAACAAATGATGCAAAATAAATTTGTAAGT
CCAACGACAGCAGGTACGATGGAATGGGCAAAATTAGGTATTTTATTATCTTTAATTTTCTTTCCTAAAGGACATATACT
TATCAAATTAATTTTTGCTGTTATATGCAGTGTAGTTGGAACTTATTTCTTTGTTAAATTAGTTCAACTTATTAAGGTGA
AAGATGTCATCTTTATTCCGTTGTTAGGTATTATGCTTGGTGGCATAGTTTCTAGTTTTACGACATTTATTGCGTTACGT
ACAAATGCAGTTCAAAGCATAGGTAATTGGTTGAATGGTAATTTTGCCATTATTACTAGTGGTCGTTACGAAGTATTATA
TTTAAGTATTCCGTTTTTAATAATTACATATATATTTGCGAACCATTTTACGATTGCGGGTATGGGCAAAGACTTCAGCC
ATAACTTAGGAGTTAACTATGAAAAAATAATTAACATCGCTTTATTTATAACTGCAACAATTACTGCGCTTGTTGTTGTC
ACTGTTGGTACATTACCATTTCTAGGGTTAATTGTTCCTAATATCATTTCAATTTATAGAGGAGACCATTTAAAACATGC
TTTACCTCATACAATGATGTTAGGTGCGGTCTTTGTGCTGTTTTCAGACATTATAGGTCGACTAATCGTGTACCCATACG
AAATTAACATCGGTTTAACTATAGGTGTGTTTGGAACTATTATATTCCTTATCTTATTGATGAAAGGTAGGGGTAATTAT
GCTAACTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653Z3V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.438

99.379

0.481