Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6J09_RS03675 Genome accession   NZ_CP068216
Coordinates   765803..766519 (+) Length   238 a.a.
NCBI ID   WP_119623060.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 760803..771519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS03640 (I6J09_03635) - 761308..761934 (+) 627 WP_208969995.1 nitroreductase family protein -
  I6J09_RS03645 (I6J09_03640) - 762049..762834 (+) 786 WP_119622958.1 carbon-nitrogen family hydrolase -
  I6J09_RS03650 (I6J09_03645) - 763232..763309 (-) 78 WP_072291871.1 delta-lysin family phenol-soluble modulin -
  I6J09_RS03655 (I6J09_03650) - 763374..763451 (-) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  I6J09_RS03660 (I6J09_03655) - 763769..764332 (+) 564 WP_119623148.1 accessory gene regulator AgrB -
  I6J09_RS03665 (I6J09_03660) agrD 764337..764477 (+) 141 WP_208969996.1 cyclic lactone autoinducer peptide AgrD -
  I6J09_RS03670 (I6J09_03665) agrC 764501..765790 (+) 1290 WP_154895546.1 quorum-sensing sensor histidine kinase AgrC -
  I6J09_RS03675 (I6J09_03670) agrA 765803..766519 (+) 717 WP_119623060.1 quorum-sensing response regulator AgrA Regulator
  I6J09_RS03680 (I6J09_03675) - 766590..767549 (-) 960 WP_046467594.1 carbohydrate kinase family protein -
  I6J09_RS03685 (I6J09_03680) - 767546..769030 (-) 1485 WP_119623059.1 sucrose-6-phosphate hydrolase -
  I6J09_RS03690 (I6J09_03685) - 769150..770100 (-) 951 WP_046467596.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27927.94 Da        Isoelectric Point: 5.9189

>NTDB_id=528142 I6J09_RS03675 WP_119623060.1 765803..766519(+) (agrA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MKIFICEDDPKQRENMTSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDNPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=528142 I6J09_RS03675 WP_119623060.1 765803..766519(+) (agrA) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGAAAATTTTCATTTGCGAAGATGATCCAAAACAAAGAGAGAATATGACTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAACCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATCG
GTTGTTATTTCTTAGATATCCAACTCGAAGCAGATATTAATGGCATTAAATTAGGTAGTGAAATTCGCAAACATGACCCT
GTTGGCAATATTATATTTGTTACAAGTCATAGCGAACTAACATACCTCACCTTTGTATACAAAGTGGCAGCGATGGATTT
CATATTTAAAGATAACCCAGCAGAACTGAAAACGCGAATTATTGATTGTTTAGAAACCGCTCACACAAGACTTAAGTTAT
TATCAAAAGAAAGTAATGTTGAAACAATCGAATTAAAACGTGGAAGTAATTCAGTGTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACATCGTTTAATCGCCCATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGACCGCTTCTTTAGATGCCACAATAGTTTTGTAGTTAATCGAAGAAACATAGAATCGATTG
ATTCAAAAGAACGTATTGTCTATTTCAAAAACAAAGAACATTGTTATGCATCTGTTCGTAATGTTAAAAAAATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.277

100

0.933