Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   BAJP3144_RS16590 Genome accession   NZ_CP082283
Coordinates   3338200..3339561 (-) Length   453 a.a.
NCBI ID   WP_100261999.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3333200..3344561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS16565 (BAJP3144_16565) - 3333307..3334131 (-) 825 WP_014418835.1 ABC transporter ATP-binding protein -
  BAJP3144_RS16570 (BAJP3144_16570) - 3334287..3334724 (-) 438 WP_174747295.1 YusW family protein -
  BAJP3144_RS16575 (BAJP3144_16575) - 3334843..3336624 (-) 1782 WP_094296279.1 M3 family oligoendopeptidase -
  BAJP3144_RS16580 (BAJP3144_16580) - 3336757..3337599 (+) 843 WP_017418950.1 oxidoreductase -
  BAJP3144_RS16585 (BAJP3144_16585) - 3337689..3338153 (+) 465 WP_007410071.1 Dps family protein -
  BAJP3144_RS16590 (BAJP3144_16590) htrA 3338200..3339561 (-) 1362 WP_100261999.1 S1C family serine protease Regulator
  BAJP3144_RS16595 (BAJP3144_16595) - 3339839..3340516 (+) 678 WP_014418841.1 response regulator transcription factor -
  BAJP3144_RS16600 (BAJP3144_16600) - 3340513..3341868 (+) 1356 WP_024085775.1 cell wall metabolism sensor histidine kinase WalK -
  BAJP3144_RS16605 (BAJP3144_16605) spxO 3341905..3342069 (-) 165 WP_007410067.1 anti-adapter protein SpxO -
  BAJP3144_RS16610 (BAJP3144_16610) - 3342248..3343123 (+) 876 WP_014305782.1 TetR/AcrR family transcriptional regulator -
  BAJP3144_RS16615 (BAJP3144_16615) fumC 3343160..3344548 (-) 1389 WP_007410064.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47872.43 Da        Isoelectric Point: 5.1049

>NTDB_id=528079 BAJP3144_RS16590 WP_100261999.1 3338200..3339561(-) (htrA) [Bacillus amyloliquefaciens strain JP3144]
MNDHRDDGRSRDQSDLSHTEQNRNEQQRISHQEPELLEGPVSKEAEKETAAGAEFEKTAAVKKEKKRRAAWLSPILGGII
GGGLVLGIVPNLPSEQHKTEAVSDTKQVQSSNFTSTPLKNTSSVADMVEDLEPAIVGVSNYQASQSSQFGLDGGSSSETE
SGTGSGVIFKKDGEKAYIITNNHVIEGANKLSVTLYNGKTETAKLVGKDAISDLAVLEISSSNVKKAASFGDSSKLRIAD
KVIAIGNPLGQQFSGTVTQGVISGLNRTVDADTSQGTVEMNVIQTDAAINPGNSGGPLINSSGQVIGINSMKVSESGVES
LGFAIPSNDVEPIVDQLLAKGKVERPFLGVQMIDMSQVPETYQENTLGLFGDQLSKGVYVKEVQSGSPAAKAGIKSNDVI
VQLNGKDVGSSADIRQILYNQLKIGDKTTVQVLRSGSKKTLNVTLTKQTESAS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=528079 BAJP3144_RS16590 WP_100261999.1 3338200..3339561(-) (htrA) [Bacillus amyloliquefaciens strain JP3144]
ATGAATGATCATCGAGATGACGGCAGAAGCCGCGATCAGTCAGATCTTTCACATACGGAACAAAACAGAAATGAACAGCA
GCGGATCAGCCATCAGGAGCCGGAGCTGCTCGAAGGGCCCGTCTCGAAAGAAGCGGAAAAAGAGACGGCCGCCGGCGCGG
AATTTGAAAAAACGGCTGCCGTGAAAAAAGAAAAAAAACGGAGAGCCGCTTGGCTGAGCCCGATTTTAGGCGGTATTATC
GGCGGAGGCCTCGTGCTTGGCATTGTGCCGAACCTGCCGAGTGAGCAGCATAAGACAGAAGCCGTTTCTGATACGAAACA
AGTTCAGTCTTCGAATTTTACGTCAACGCCTTTGAAAAATACCTCAAGCGTAGCGGATATGGTAGAAGATTTGGAGCCTG
CGATTGTGGGAGTGTCCAACTACCAAGCTTCGCAAAGCAGCCAGTTCGGACTTGACGGCGGTTCAAGCTCTGAAACGGAA
AGCGGCACGGGGTCAGGCGTCATCTTCAAAAAAGACGGCGAAAAAGCGTACATCATCACAAACAATCATGTCATAGAAGG
GGCGAACAAACTGTCGGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGCTTGTCGGAAAGGATGCCATCAGTGACT
TGGCTGTATTGGAAATCAGCTCGTCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCATTGCCGAT
AAAGTGATTGCCATCGGCAACCCGCTCGGCCAGCAGTTTTCCGGCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAG
AACGGTAGACGCCGATACATCTCAAGGCACGGTGGAAATGAACGTGATTCAGACGGATGCGGCGATTAACCCCGGAAACA
GCGGCGGCCCGTTAATCAACTCAAGCGGCCAGGTTATCGGGATCAACAGCATGAAAGTCAGTGAAAGCGGCGTGGAGTCA
CTCGGCTTTGCCATTCCGAGCAATGATGTAGAACCGATAGTCGACCAGCTGCTTGCAAAAGGAAAAGTCGAGCGCCCGTT
TTTAGGTGTGCAGATGATTGATATGTCGCAAGTGCCGGAAACCTATCAGGAAAACACGCTCGGACTGTTCGGCGACCAGC
TGTCTAAGGGTGTTTACGTAAAAGAGGTGCAATCCGGCTCACCGGCTGCGAAAGCGGGCATCAAATCAAATGACGTCATT
GTACAATTGAACGGCAAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCTTATATAACCAGCTGAAAATCGGCGATAA
GACGACTGTTCAAGTTCTCAGAAGCGGAAGCAAAAAGACGCTGAACGTCACATTAACGAAACAAACCGAAAGCGCAAGCT
GA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(363-451)

PDZ domain (PDZ_2)

(346-445)

Trypsin-like peptidase domain (Trypsin_2)

(164-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

41.414

87.417

0.362