Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BAJP3144_RS11655 Genome accession   NZ_CP082283
Coordinates   2371788..2373278 (-) Length   496 a.a.
NCBI ID   WP_014418273.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2366788..2378278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS11625 (BAJP3144_11625) gudB 2366865..2368139 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  BAJP3144_RS11630 (BAJP3144_11630) - 2368300..2368884 (-) 585 WP_003153412.1 genetic competence negative regulator -
  BAJP3144_RS11635 (BAJP3144_11635) - 2369036..2369824 (-) 789 WP_022553024.1 metallophosphoesterase -
  BAJP3144_RS11640 (BAJP3144_11640) - 2369911..2370369 (-) 459 WP_007409443.1 YpbF family protein -
  BAJP3144_RS11645 (BAJP3144_11645) - 2370438..2371208 (-) 771 WP_014418272.1 LysM peptidoglycan-binding domain-containing protein -
  BAJP3144_RS11650 (BAJP3144_11650) - 2371186..2371773 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  BAJP3144_RS11655 (BAJP3144_11655) recS 2371788..2373278 (-) 1491 WP_014418273.1 ATP-dependent DNA helicase RecQ Machinery gene
  BAJP3144_RS11660 (BAJP3144_11660) - 2373271..2374329 (-) 1059 WP_014418274.1 helix-turn-helix domain-containing protein -
  BAJP3144_RS11665 (BAJP3144_11665) - 2374598..2374846 (+) 249 WP_003153403.1 ferredoxin -
  BAJP3144_RS11670 (BAJP3144_11670) - 2374982..2375554 (-) 573 WP_003153402.1 ECF transporter S component -
  BAJP3144_RS11675 (BAJP3144_11675) serA 2376044..2377621 (+) 1578 WP_209387396.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55983.04 Da        Isoelectric Point: 6.2484

>NTDB_id=528040 BAJP3144_RS11655 WP_014418273.1 2371788..2373278(-) (recS) [Bacillus amyloliquefaciens strain JP3144]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEAILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=528040 BAJP3144_RS11655 WP_014418273.1 2371788..2373278(-) (recS) [Bacillus amyloliquefaciens strain JP3144]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGG
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGACCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
CCTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCGGATAATG
CCGAGAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGCCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAAAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685