Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6J13_RS05140 Genome accession   NZ_CP068213
Coordinates   1056485..1057411 (-) Length   308 a.a.
NCBI ID   WP_006270263.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051485..1062411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS05120 (I6J13_05120) - 1052421..1053386 (+) 966 WP_006270237.1 LacI family DNA-binding transcriptional regulator -
  I6J13_RS05125 (I6J13_05125) - 1053471..1054289 (-) 819 WP_006270209.1 Cof-type HAD-IIB family hydrolase -
  I6J13_RS05130 (I6J13_05130) amiF 1054475..1055398 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  I6J13_RS05135 (I6J13_05135) amiE 1055409..1056476 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  I6J13_RS05140 (I6J13_05140) amiD 1056485..1057411 (-) 927 WP_006270263.1 oligopeptide ABC transporter permease OppC Regulator
  I6J13_RS05145 (I6J13_05145) amiC 1057411..1058907 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  I6J13_RS05150 (I6J13_05150) amiA3 1059271..1061250 (-) 1980 WP_006270242.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34507.57 Da        Isoelectric Point: 9.8589

>NTDB_id=528040 I6J13_RS05140 WP_006270263.1 1056485..1057411(-) (amiD) [Streptococcus constellatus strain FDAARGOS_1156]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATMINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=528040 I6J13_RS05140 WP_006270263.1 1056485..1057411(-) (amiD) [Streptococcus constellatus strain FDAARGOS_1156]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCGCCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGAAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCATGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAGACTGTCGATCGTGTGATGATTGAGATTTATAATATCATTTCTAACATTCCACCGCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCTATGACCATCACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATCCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTGGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAATGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834